Strain Fitness in Pseudomonas simiae WCS417 around PS417_27120

Experiment: Gentamicin 0.008 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Gentamicin 0.008 mg/ml
5,853,116	+		PS417_27115	0.26	+2.8
5,853,117	-		PS417_27115	0.26	+2.3
5,853,117	-		PS417_27115	0.26	+2.3
5,853,117	-		PS417_27115	0.26	+2.7
5,853,117	-		PS417_27115	0.26	+2.1
5,853,242	+		PS417_27115	0.37	+2.6
5,853,639	+		PS417_27115	0.72	+0.1
5,853,639	+		PS417_27115	0.72	+2.8
5,853,639	+		PS417_27115	0.72	+2.9
5,853,639	+		PS417_27115	0.72	+2.8
5,853,726	-		PS417_27115	0.79	+1.7
5,853,939	+				+2.5
5,853,941	+				+3.0
5,853,966	-				+3.9
5,854,031	+				+3.5
5,854,032	-				+0.1
5,854,032	-				-0.8
5,854,032	-				-2.0
5,854,211	+		PS417_27120	0.17	+3.3
5,854,212	-		PS417_27120	0.17	-1.6
5,854,250	+		PS417_27120	0.20	+0.7
5,854,250	+		PS417_27120	0.20	+1.7
5,854,347	-		PS417_27120	0.29	-0.8
5,854,457	+		PS417_27120	0.39	+2.6
5,854,457	+		PS417_27120	0.39	+1.8
5,854,475	+		PS417_27120	0.41	+0.8
5,854,476	-		PS417_27120	0.41	-0.1
5,854,476	-		PS417_27120	0.41	+0.5
5,854,539	+		PS417_27120	0.46	+1.6
5,854,540	-		PS417_27120	0.47	+0.4
5,854,562	+		PS417_27120	0.49	+0.4
5,854,562	+		PS417_27120	0.49	+2.3
5,854,563	-		PS417_27120	0.49	+0.4
5,854,563	-		PS417_27120	0.49	-1.2
5,854,739	+		PS417_27120	0.65	+2.7
5,854,752	-		PS417_27120	0.66	+0.3
5,854,961	+		PS417_27120	0.85	+1.8
5,855,034	-				-0.4
5,855,037	+				+2.9
5,855,037	+				+4.1
5,855,037	+				+2.7
5,855,038	-				+1.0
5,855,038	-				-2.2
5,855,038	-				+1.8
5,855,038	-				-2.7
5,855,138	+				+2.7
5,855,139	-				+0.4
5,855,142	+				+2.5
5,855,142	+				+2.5
5,855,189	+				+2.3
5,855,229	-				-1.4
5,855,355	-				+5.1
5,855,384	+				+1.9
5,855,384	+				+1.9
5,855,498	+		PS417_27125	0.20	+2.1
5,855,498	+		PS417_27125	0.20	+2.9
5,855,498	+		PS417_27125	0.20	+2.0
5,855,499	-		PS417_27125	0.20	-2.0
5,855,499	-		PS417_27125	0.20	-1.1
5,855,499	-		PS417_27125	0.20	-1.5
5,855,513	+		PS417_27125	0.21	+1.6
5,855,514	-		PS417_27125	0.22	-1.4
5,855,514	-		PS417_27125	0.22	-1.3
5,855,680	-		PS417_27125	0.37	+0.3
5,855,680	-		PS417_27125	0.37	-0.8
5,855,705	+		PS417_27125	0.39	+2.8
5,855,705	+		PS417_27125	0.39	+3.3
5,855,705	+		PS417_27125	0.39	+2.4
5,855,706	-		PS417_27125	0.39	-0.4
5,855,706	-		PS417_27125	0.39	-0.5
5,855,811	-		PS417_27125	0.49	+0.5
5,855,811	-		PS417_27125	0.49	+1.2
5,855,811	-		PS417_27125	0.49	+2.2
5,855,988	-		PS417_27125	0.65	-1.8
5,855,988	-		PS417_27125	0.65	-0.2
5,855,988	-		PS417_27125	0.65	-0.5
5,855,988	-				-0.5
5,856,060	-		PS417_27125	0.71	-1.9
5,856,092	+		PS417_27125	0.74	+1.6