Experiment: Gentamicin 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_26950 and PS417_26955 are separated by 16 nucleotides PS417_26955 and PS417_26960 are separated by 85 nucleotides PS417_26960 and PS417_26965 are separated by 144 nucleotides
PS417_26950: PS417_26950 - LysR family transcriptional regulator, at 5,820,497 to 5,821,360
_26950
PS417_26955: PS417_26955 - ATPase P, at 5,821,377 to 5,823,623
_26955
PS417_26960: PS417_26960 - Cd(II)/Pb(II)-responsive transcriptional regulator, at 5,823,709 to 5,824,149
_26960
PS417_26965: PS417_26965 - thymidylate synthase, at 5,824,294 to 5,825,127
_26965
Position (kb) 5821
5822
5823
5824 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5820.498 kb on + strand at 5820.498 kb on + strand at 5820.499 kb on - strand at 5820.499 kb on - strand at 5820.499 kb on - strand at 5820.502 kb on + strand at 5820.502 kb on + strand at 5820.502 kb on + strand at 5820.502 kb on + strand at 5820.503 kb on - strand at 5820.503 kb on - strand at 5820.503 kb on - strand at 5820.503 kb on - strand at 5820.503 kb on - strand at 5820.573 kb on + strand at 5820.830 kb on + strand, within PS417_26950 at 5820.831 kb on - strand, within PS417_26950 at 5820.831 kb on - strand, within PS417_26950 at 5821.059 kb on + strand, within PS417_26950 at 5821.059 kb on + strand, within PS417_26950 at 5821.059 kb on + strand, within PS417_26950 at 5821.059 kb on + strand, within PS417_26950 at 5821.059 kb on + strand, within PS417_26950 at 5821.059 kb on + strand, within PS417_26950 at 5821.060 kb on - strand, within PS417_26950 at 5821.062 kb on + strand, within PS417_26950 at 5821.062 kb on + strand, within PS417_26950 at 5821.063 kb on - strand, within PS417_26950 at 5821.063 kb on - strand, within PS417_26950 at 5821.063 kb on - strand, within PS417_26950 at 5821.063 kb on - strand, within PS417_26950 at 5821.063 kb on - strand, within PS417_26950 at 5821.162 kb on + strand, within PS417_26950 at 5821.162 kb on + strand, within PS417_26950 at 5821.343 kb on + strand at 5823.763 kb on + strand, within PS417_26960 at 5824.147 kb on + strand at 5824.148 kb on - strand at 5824.231 kb on + strand at 5824.231 kb on + strand at 5824.232 kb on - strand at 5824.232 kb on - strand at 5824.244 kb on + strand at 5824.244 kb on + strand at 5824.244 kb on + strand at 5824.244 kb on + strand at 5824.244 kb on + strand at 5824.244 kb on + strand at 5824.244 kb on + strand at 5824.245 kb on - strand at 5824.245 kb on - strand at 5824.245 kb on - strand at 5824.245 kb on - strand at 5824.245 kb on - strand at 5824.245 kb on - strand at 5824.245 kb on - strand at 5824.279 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Gentamicin 0.008 mg/ml remove 5,820,498 + -0.4 5,820,498 + +0.6 5,820,499 - +0.9 5,820,499 - -0.8 5,820,499 - +0.3 5,820,502 + +0.8 5,820,502 + +0.6 5,820,502 + +1.9 5,820,502 + +2.3 5,820,503 - -1.7 5,820,503 - -0.3 5,820,503 - +0.1 5,820,503 - +2.0 5,820,503 - +0.2 5,820,573 + -2.4 5,820,830 + PS417_26950 0.39 -0.8 5,820,831 - PS417_26950 0.39 +0.8 5,820,831 - PS417_26950 0.39 +2.2 5,821,059 + PS417_26950 0.65 -1.1 5,821,059 + PS417_26950 0.65 -0.7 5,821,059 + PS417_26950 0.65 -0.8 5,821,059 + PS417_26950 0.65 -1.9 5,821,059 + PS417_26950 0.65 -1.0 5,821,059 + PS417_26950 0.65 -1.5 5,821,060 - PS417_26950 0.65 -0.8 5,821,062 + PS417_26950 0.65 +0.5 5,821,062 + PS417_26950 0.65 -0.8 5,821,063 - PS417_26950 0.66 +0.1 5,821,063 - PS417_26950 0.66 +0.7 5,821,063 - PS417_26950 0.66 -0.3 5,821,063 - PS417_26950 0.66 -0.7 5,821,063 - PS417_26950 0.66 +0.4 5,821,162 + PS417_26950 0.77 +0.8 5,821,162 + PS417_26950 0.77 +2.4 5,821,343 + -0.2 5,823,763 + PS417_26960 0.12 -3.0 5,824,147 + -2.1 5,824,148 - +0.3 5,824,231 + -1.3 5,824,231 + -2.2 5,824,232 - +0.3 5,824,232 - +2.1 5,824,244 + -0.6 5,824,244 + +0.5 5,824,244 + +0.1 5,824,244 + -0.5 5,824,244 + -0.4 5,824,244 + -1.2 5,824,244 + -1.3 5,824,245 - +0.7 5,824,245 - -1.3 5,824,245 - -0.5 5,824,245 - -2.7 5,824,245 - -1.6 5,824,245 - -0.1 5,824,245 - -1.2 5,824,279 - +0.1
Or see this region's nucleotide sequence