Strain Fitness in Pseudomonas simiae WCS417 around PS417_00265

Experiment: Gentamicin 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_00255 and PS417_00260 are separated by 194 nucleotidesPS417_00260 and PS417_00265 are separated by 2 nucleotidesPS417_00265 and PS417_00270 are separated by 12 nucleotides PS417_00255: PS417_00255 - hypothetical protein, at 49,538 to 49,741 _00255 PS417_00260: PS417_00260 - gluconate 2-dehydrogenase, at 49,936 to 50,688 _00260 PS417_00265: PS417_00265 - GMC family oxidoreductase, at 50,691 to 52,475 _00265 PS417_00270: PS417_00270 - alcohol dehydrogenase, at 52,488 to 53,750 _00270 Position (kb) 50 51 52 53Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5 6 7 8at 49.800 kb on + strandat 49.839 kb on + strandat 49.840 kb on - strandat 49.840 kb on - strandat 49.840 kb on - strandat 49.891 kb on + strandat 49.892 kb on - strandat 49.892 kb on - strandat 50.104 kb on + strand, within PS417_00260at 50.104 kb on + strand, within PS417_00260at 50.105 kb on - strand, within PS417_00260at 50.219 kb on - strand, within PS417_00260at 50.219 kb on - strand, within PS417_00260at 50.436 kb on - strand, within PS417_00260at 50.436 kb on - strand, within PS417_00260at 50.436 kb on - strand, within PS417_00260at 50.436 kb on - strand, within PS417_00260at 50.436 kb on - strand, within PS417_00260at 50.436 kb on - strand, within PS417_00260at 50.436 kb on - strand, within PS417_00260at 50.687 kb on - strandat 50.687 kb on - strandat 50.729 kb on - strandat 50.810 kb on + strandat 50.810 kb on + strandat 50.810 kb on + strandat 50.823 kb on + strandat 50.839 kb on - strandat 50.865 kb on + strandat 50.865 kb on + strandat 51.061 kb on - strand, within PS417_00265at 51.126 kb on + strand, within PS417_00265at 51.127 kb on - strand, within PS417_00265at 51.127 kb on - strand, within PS417_00265at 51.127 kb on - strand, within PS417_00265at 51.127 kb on - strand, within PS417_00265at 51.197 kb on - strand, within PS417_00265at 51.339 kb on + strand, within PS417_00265at 51.339 kb on + strand, within PS417_00265at 51.340 kb on - strand, within PS417_00265at 51.340 kb on - strand, within PS417_00265at 51.340 kb on - strand, within PS417_00265at 51.340 kb on - strand, within PS417_00265at 51.372 kb on + strand, within PS417_00265at 51.373 kb on - strand, within PS417_00265at 51.441 kb on + strand, within PS417_00265at 51.441 kb on + strand, within PS417_00265at 51.442 kb on - strand, within PS417_00265at 51.442 kb on - strand, within PS417_00265at 51.447 kb on + strand, within PS417_00265at 51.447 kb on + strand, within PS417_00265at 51.447 kb on + strand, within PS417_00265at 51.447 kb on + strand, within PS417_00265at 51.448 kb on - strand, within PS417_00265at 51.448 kb on - strand, within PS417_00265at 51.448 kb on - strand, within PS417_00265at 51.448 kb on - strand, within PS417_00265at 51.448 kb on - strand, within PS417_00265at 51.579 kb on + strand, within PS417_00265at 51.579 kb on + strand, within PS417_00265at 51.580 kb on - strand, within PS417_00265at 51.580 kb on - strand, within PS417_00265at 51.580 kb on - strand, within PS417_00265at 51.580 kb on - strand, within PS417_00265at 51.736 kb on - strand, within PS417_00265at 51.984 kb on + strand, within PS417_00265at 51.987 kb on + strand, within PS417_00265at 51.987 kb on + strand, within PS417_00265at 51.988 kb on - strand, within PS417_00265at 51.988 kb on - strand, within PS417_00265at 52.040 kb on + strand, within PS417_00265at 52.044 kb on + strand, within PS417_00265at 52.045 kb on - strand, within PS417_00265at 52.045 kb on - strand, within PS417_00265at 52.240 kb on - strand, within PS417_00265at 52.377 kb on + strandat 52.410 kb on + strandat 52.473 kb on + strandat 52.674 kb on + strand, within PS417_00270at 52.675 kb on - strand, within PS417_00270at 52.717 kb on - strand, within PS417_00270at 52.717 kb on - strand, within PS417_00270at 52.770 kb on - strand, within PS417_00270at 52.772 kb on + strand, within PS417_00270at 52.772 kb on + strand, within PS417_00270at 52.772 kb on + strand, within PS417_00270at 52.772 kb on + strand, within PS417_00270at 52.773 kb on - strand, within PS417_00270at 52.773 kb on - strand, within PS417_00270at 52.803 kb on + strand, within PS417_00270at 52.803 kb on + strand, within PS417_00270at 52.839 kb on + strand, within PS417_00270at 52.840 kb on - strand, within PS417_00270at 52.840 kb on - strand, within PS417_00270at 52.846 kb on - strand, within PS417_00270at 52.846 kb on - strand, within PS417_00270at 53.052 kb on - strand, within PS417_00270at 53.246 kb on - strand, within PS417_00270at 53.286 kb on + strand, within PS417_00270at 53.286 kb on + strand, within PS417_00270at 53.286 kb on + strand, within PS417_00270at 53.286 kb on + strand, within PS417_00270at 53.286 kb on + strand, within PS417_00270at 53.286 kb on + strand, within PS417_00270at 53.286 kb on + strand, within PS417_00270at 53.286 kb on + strand, within PS417_00270at 53.286 kb on + strand, within PS417_00270at 53.286 kb on + strand, within PS417_00270at 53.287 kb on - strand, within PS417_00270at 53.287 kb on - strand, within PS417_00270at 53.287 kb on - strand, within PS417_00270at 53.287 kb on - strand, within PS417_00270at 53.287 kb on - strand, within PS417_00270at 53.287 kb on - strand, within PS417_00270at 53.370 kb on + strand, within PS417_00270at 53.371 kb on - strand, within PS417_00270at 53.371 kb on - strand, within PS417_00270at 53.371 kb on - strand, within PS417_00270at 53.433 kb on + strand, within PS417_00270at 53.433 kb on + strand, within PS417_00270at 53.434 kb on - strand, within PS417_00270at 53.434 kb on - strand, within PS417_00270at 53.434 kb on - strand, within PS417_00270

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Per-strain Table

Position Strand Gene LocusTag Fraction Gentamicin 0.008 mg/ml
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49,800 + -1.0
49,839 + +0.2
49,840 - -1.9
49,840 - -2.2
49,840 - +0.3
49,891 + -1.7
49,892 - +1.8
49,892 - +1.6
50,104 + PS417_00260 0.22 -0.0
50,104 + PS417_00260 0.22 +0.7
50,105 - PS417_00260 0.22 +3.0
50,219 - PS417_00260 0.38 +0.6
50,219 - PS417_00260 0.38 +0.1
50,436 - PS417_00260 0.66 +0.2
50,436 - PS417_00260 0.66 +0.8
50,436 - PS417_00260 0.66 -0.3
50,436 - PS417_00260 0.66 +1.0
50,436 - PS417_00260 0.66 -0.4
50,436 - PS417_00260 0.66 -0.3
50,436 - PS417_00260 0.66 +0.3
50,687 - -2.1
50,687 - -0.3
50,729 - -1.8
50,810 + -0.4
50,810 + -0.6
50,810 + -0.8
50,823 + -2.8
50,839 - +2.5
50,865 + +1.4
50,865 + -0.9
51,061 - PS417_00265 0.21 -2.0
51,126 + PS417_00265 0.24 -2.2
51,127 - PS417_00265 0.24 -0.1
51,127 - PS417_00265 0.24 +0.6
51,127 - PS417_00265 0.24 +3.3
51,127 - PS417_00265 0.24 +0.9
51,197 - PS417_00265 0.28 -1.1
51,339 + PS417_00265 0.36 -0.1
51,339 + PS417_00265 0.36 -0.7
51,340 - PS417_00265 0.36 -0.4
51,340 - PS417_00265 0.36 +2.8
51,340 - PS417_00265 0.36 +0.1
51,340 - PS417_00265 0.36 -3.2
51,372 + PS417_00265 0.38 +0.3
51,373 - PS417_00265 0.38 +0.9
51,441 + PS417_00265 0.42 -2.1
51,441 + PS417_00265 0.42 +0.0
51,442 - PS417_00265 0.42 +0.2
51,442 - PS417_00265 0.42 -1.0
51,447 + PS417_00265 0.42 -0.5
51,447 + PS417_00265 0.42 +1.6
51,447 + PS417_00265 0.42 +0.2
51,447 + PS417_00265 0.42 +0.6
51,448 - PS417_00265 0.42 +0.1
51,448 - PS417_00265 0.42 +0.4
51,448 - PS417_00265 0.42 -3.2
51,448 - PS417_00265 0.42 +1.5
51,448 - PS417_00265 0.42 +2.1
51,579 + PS417_00265 0.50 +1.7
51,579 + PS417_00265 0.50 +1.2
51,580 - PS417_00265 0.50 +0.1
51,580 - PS417_00265 0.50 -1.2
51,580 - PS417_00265 0.50 +0.2
51,580 - PS417_00265 0.50 -1.9
51,736 - PS417_00265 0.59 -0.8
51,984 + PS417_00265 0.72 +8.7
51,987 + PS417_00265 0.73 +1.6
51,987 + PS417_00265 0.73 -0.1
51,988 - PS417_00265 0.73 +0.7
51,988 - PS417_00265 0.73 -0.9
52,040 + PS417_00265 0.76 +0.4
52,044 + PS417_00265 0.76 +0.3
52,045 - PS417_00265 0.76 -1.8
52,045 - PS417_00265 0.76 -0.3
52,240 - PS417_00265 0.87 +0.2
52,377 + -0.9
52,410 + -2.3
52,473 + +0.0
52,674 + PS417_00270 0.15 -0.6
52,675 - PS417_00270 0.15 +1.7
52,717 - PS417_00270 0.18 +0.2
52,717 - PS417_00270 0.18 -1.3
52,770 - PS417_00270 0.22 +0.2
52,772 + PS417_00270 0.22 +0.3
52,772 + PS417_00270 0.22 +0.2
52,772 + PS417_00270 0.22 +0.0
52,772 + PS417_00270 0.22 -0.6
52,773 - PS417_00270 0.23 +1.0
52,773 - PS417_00270 0.23 +1.5
52,803 + PS417_00270 0.25 -0.5
52,803 + PS417_00270 0.25 +0.1
52,839 + PS417_00270 0.28 +0.8
52,840 - PS417_00270 0.28 +0.8
52,840 - PS417_00270 0.28 +0.2
52,846 - PS417_00270 0.28 +0.2
52,846 - PS417_00270 0.28 +0.3
53,052 - PS417_00270 0.45 -1.6
53,246 - PS417_00270 0.60 -0.2
53,286 + PS417_00270 0.63 -0.7
53,286 + PS417_00270 0.63 -2.0
53,286 + PS417_00270 0.63 -0.2
53,286 + PS417_00270 0.63 +0.5
53,286 + PS417_00270 0.63 +1.0
53,286 + PS417_00270 0.63 +0.1
53,286 + PS417_00270 0.63 -1.8
53,286 + PS417_00270 0.63 -0.8
53,286 + PS417_00270 0.63 -0.3
53,286 + PS417_00270 0.63 +0.5
53,287 - PS417_00270 0.63 -0.3
53,287 - PS417_00270 0.63 -0.7
53,287 - PS417_00270 0.63 -1.1
53,287 - PS417_00270 0.63 +1.2
53,287 - PS417_00270 0.63 -0.1
53,287 - PS417_00270 0.63 +0.4
53,370 + PS417_00270 0.70 +0.5
53,371 - PS417_00270 0.70 +2.0
53,371 - PS417_00270 0.70 -2.9
53,371 - PS417_00270 0.70 -0.2
53,433 + PS417_00270 0.75 +0.0
53,433 + PS417_00270 0.75 -1.8
53,434 - PS417_00270 0.75 +1.5
53,434 - PS417_00270 0.75 +0.6
53,434 - PS417_00270 0.75 +1.1

Or see this region's nucleotide sequence