Experiment: Gentamicin 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_26485 and PS417_26490 overlap by 7 nucleotides PS417_26490 and PS417_26495 are separated by 71 nucleotides
PS417_26485: PS417_26485 - sodium:proton antiporter, at 5,726,989 to 5,728,248
_26485
PS417_26490: PS417_26490 - membrane protein, at 5,728,242 to 5,729,129
_26490
PS417_26495: PS417_26495 - type III secretion system effector protein exou, at 5,729,201 to 5,731,132
_26495
Position (kb) 5728
5729
5730 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5727.245 kb on + strand, within PS417_26485 at 5727.246 kb on - strand, within PS417_26485 at 5727.340 kb on + strand, within PS417_26485 at 5727.343 kb on + strand, within PS417_26485 at 5727.343 kb on + strand, within PS417_26485 at 5727.344 kb on - strand, within PS417_26485 at 5727.344 kb on - strand, within PS417_26485 at 5727.440 kb on + strand, within PS417_26485 at 5727.591 kb on - strand, within PS417_26485 at 5727.650 kb on - strand, within PS417_26485 at 5727.833 kb on - strand, within PS417_26485 at 5728.144 kb on + strand at 5728.145 kb on - strand at 5728.346 kb on + strand, within PS417_26490 at 5728.347 kb on - strand, within PS417_26490 at 5728.364 kb on + strand, within PS417_26490 at 5728.365 kb on - strand, within PS417_26490 at 5728.495 kb on + strand, within PS417_26490 at 5728.496 kb on - strand, within PS417_26490 at 5728.514 kb on + strand, within PS417_26490 at 5728.515 kb on - strand, within PS417_26490 at 5728.515 kb on - strand, within PS417_26490 at 5728.690 kb on + strand, within PS417_26490 at 5728.691 kb on - strand, within PS417_26490 at 5728.691 kb on - strand, within PS417_26490 at 5728.691 kb on - strand, within PS417_26490 at 5728.691 kb on - strand, within PS417_26490 at 5728.691 kb on - strand, within PS417_26490 at 5728.691 kb on - strand, within PS417_26490 at 5728.691 kb on - strand, within PS417_26490 at 5728.865 kb on - strand, within PS417_26490 at 5729.158 kb on - strand at 5729.161 kb on + strand at 5729.162 kb on - strand at 5729.202 kb on + strand at 5729.202 kb on + strand at 5729.202 kb on + strand at 5729.203 kb on - strand at 5729.284 kb on - strand at 5729.364 kb on - strand at 5729.372 kb on + strand at 5729.372 kb on + strand at 5729.373 kb on - strand at 5729.373 kb on - strand at 5729.413 kb on - strand, within PS417_26495 at 5729.413 kb on - strand, within PS417_26495 at 5729.453 kb on - strand, within PS417_26495 at 5729.453 kb on - strand, within PS417_26495 at 5729.926 kb on + strand, within PS417_26495 at 5729.926 kb on + strand, within PS417_26495 at 5729.927 kb on - strand, within PS417_26495 at 5729.927 kb on - strand, within PS417_26495
Per-strain Table
Position Strand Gene LocusTag Fraction Gentamicin 0.008 mg/ml remove 5,727,245 + PS417_26485 0.20 +0.0 5,727,246 - PS417_26485 0.20 +0.9 5,727,340 + PS417_26485 0.28 +0.6 5,727,343 + PS417_26485 0.28 -2.1 5,727,343 + PS417_26485 0.28 -0.6 5,727,344 - PS417_26485 0.28 +0.2 5,727,344 - PS417_26485 0.28 +0.2 5,727,440 + PS417_26485 0.36 -0.4 5,727,591 - PS417_26485 0.48 -2.3 5,727,650 - PS417_26485 0.52 +1.0 5,727,833 - PS417_26485 0.67 -0.1 5,728,144 + +0.2 5,728,145 - -2.0 5,728,346 + PS417_26490 0.12 +0.3 5,728,347 - PS417_26490 0.12 -0.1 5,728,364 + PS417_26490 0.14 -0.7 5,728,365 - PS417_26490 0.14 -0.9 5,728,495 + PS417_26490 0.28 -1.1 5,728,496 - PS417_26490 0.29 +0.4 5,728,514 + PS417_26490 0.31 +0.3 5,728,515 - PS417_26490 0.31 +0.5 5,728,515 - PS417_26490 0.31 -3.7 5,728,690 + PS417_26490 0.50 -1.1 5,728,691 - PS417_26490 0.51 +0.6 5,728,691 - PS417_26490 0.51 -0.0 5,728,691 - PS417_26490 0.51 -1.1 5,728,691 - PS417_26490 0.51 -0.9 5,728,691 - PS417_26490 0.51 -0.5 5,728,691 - PS417_26490 0.51 -1.0 5,728,691 - PS417_26490 0.51 -0.4 5,728,865 - PS417_26490 0.70 +0.3 5,729,158 - -2.3 5,729,161 + +0.0 5,729,162 - -0.0 5,729,202 + +0.8 5,729,202 + -0.7 5,729,202 + +2.0 5,729,203 - +0.5 5,729,284 - -0.2 5,729,364 - +0.2 5,729,372 + -0.2 5,729,372 + +0.8 5,729,373 - +0.4 5,729,373 - -1.1 5,729,413 - PS417_26495 0.11 -1.2 5,729,413 - PS417_26495 0.11 +1.5 5,729,453 - PS417_26495 0.13 -1.2 5,729,453 - PS417_26495 0.13 +0.5 5,729,926 + PS417_26495 0.38 -1.1 5,729,926 + PS417_26495 0.38 -0.6 5,729,927 - PS417_26495 0.38 -2.1 5,729,927 - PS417_26495 0.38 -2.0
Or see this region's nucleotide sequence