Experiment: Gentamicin 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_02625 and PS417_02630 are separated by 136 nucleotides PS417_02630 and PS417_02635 are separated by 3 nucleotides PS417_02635 and PS417_02640 are separated by 207 nucleotides
PS417_02625: PS417_02625 - azurin, at 600,695 to 601,141
_02625
PS417_02630: PS417_02630 - NAD synthetase, at 601,278 to 602,105
_02630
PS417_02635: PS417_02635 - nicotinate phosphoribosyltransferase, at 602,109 to 603,323
_02635
PS417_02640: PS417_02640 - LysR family transcriptional regulator, at 603,531 to 604,421
_02640
Position (kb) 602
603
604 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 601.139 kb on + strand at 601.139 kb on + strand at 601.140 kb on - strand at 601.334 kb on + strand at 601.393 kb on + strand, within PS417_02630 at 601.394 kb on - strand at 601.394 kb on - strand, within PS417_02630 at 601.646 kb on - strand, within PS417_02630 at 601.646 kb on - strand, within PS417_02630 at 602.133 kb on + strand at 602.315 kb on + strand, within PS417_02635 at 602.316 kb on - strand, within PS417_02635 at 602.379 kb on + strand, within PS417_02635 at 602.419 kb on + strand, within PS417_02635 at 602.498 kb on - strand, within PS417_02635 at 602.498 kb on - strand, within PS417_02635 at 602.746 kb on - strand, within PS417_02635 at 602.746 kb on - strand, within PS417_02635 at 602.866 kb on + strand, within PS417_02635 at 602.997 kb on + strand, within PS417_02635 at 602.998 kb on - strand, within PS417_02635 at 602.998 kb on - strand, within PS417_02635 at 603.028 kb on + strand, within PS417_02635 at 603.170 kb on - strand, within PS417_02635 at 603.170 kb on - strand, within PS417_02635 at 603.266 kb on - strand at 603.365 kb on + strand at 603.375 kb on + strand at 603.375 kb on + strand at 603.376 kb on - strand at 603.398 kb on + strand at 603.399 kb on - strand at 603.610 kb on + strand at 603.610 kb on + strand at 603.611 kb on - strand at 603.613 kb on + strand at 603.741 kb on - strand, within PS417_02640 at 603.741 kb on - strand, within PS417_02640 at 603.742 kb on + strand, within PS417_02640 at 603.742 kb on + strand, within PS417_02640 at 603.742 kb on + strand, within PS417_02640 at 603.742 kb on + strand, within PS417_02640 at 603.743 kb on - strand, within PS417_02640 at 603.770 kb on - strand, within PS417_02640 at 603.788 kb on - strand, within PS417_02640 at 603.976 kb on + strand, within PS417_02640 at 603.976 kb on + strand, within PS417_02640 at 603.977 kb on - strand, within PS417_02640 at 604.109 kb on - strand, within PS417_02640 at 604.159 kb on + strand, within PS417_02640 at 604.166 kb on + strand, within PS417_02640
Per-strain Table
Position Strand Gene LocusTag Fraction Gentamicin 0.008 mg/ml remove 601,139 + +1.0 601,139 + -3.7 601,140 - +0.0 601,334 + -2.5 601,393 + PS417_02630 0.14 -2.2 601,394 - +1.5 601,394 - PS417_02630 0.14 -0.1 601,646 - PS417_02630 0.44 -0.6 601,646 - PS417_02630 0.44 -1.9 602,133 + -0.2 602,315 + PS417_02635 0.17 -1.1 602,316 - PS417_02635 0.17 +1.8 602,379 + PS417_02635 0.22 +0.1 602,419 + PS417_02635 0.26 -1.9 602,498 - PS417_02635 0.32 -0.2 602,498 - PS417_02635 0.32 -0.8 602,746 - PS417_02635 0.52 -0.5 602,746 - PS417_02635 0.52 -1.0 602,866 + PS417_02635 0.62 -0.3 602,997 + PS417_02635 0.73 +0.1 602,998 - PS417_02635 0.73 +0.4 602,998 - PS417_02635 0.73 -0.4 603,028 + PS417_02635 0.76 +1.6 603,170 - PS417_02635 0.87 -0.3 603,170 - PS417_02635 0.87 -0.9 603,266 - -2.8 603,365 + -0.8 603,375 + +1.7 603,375 + -0.0 603,376 - +0.7 603,398 + -0.1 603,399 - -1.1 603,610 + +0.8 603,610 + -3.0 603,611 - -1.3 603,613 + +0.4 603,741 - PS417_02640 0.24 +1.2 603,741 - PS417_02640 0.24 +0.7 603,742 + PS417_02640 0.24 -1.0 603,742 + PS417_02640 0.24 +0.5 603,742 + PS417_02640 0.24 -0.1 603,742 + PS417_02640 0.24 +0.7 603,743 - PS417_02640 0.24 -1.3 603,770 - PS417_02640 0.27 +0.7 603,788 - PS417_02640 0.29 +0.2 603,976 + PS417_02640 0.50 -1.7 603,976 + PS417_02640 0.50 -1.2 603,977 - PS417_02640 0.50 +0.5 604,109 - PS417_02640 0.65 -1.3 604,159 + PS417_02640 0.70 +0.8 604,166 + PS417_02640 0.71 -0.8
Or see this region's nucleotide sequence