Experiment: Gentamicin 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_26180 and PS417_26185 overlap by 4 nucleotides PS417_26185 and PS417_26190 are separated by 15 nucleotides
PS417_26180: PS417_26180 - sarcosine oxidase subunit alpha, at 5,656,055 to 5,659,072
_26180
PS417_26185: PS417_26185 - sarcosine oxidase subunit delta, at 5,659,069 to 5,659,371
_26185
PS417_26190: PS417_26190 - sarcosine oxidase subunit beta, at 5,659,387 to 5,660,637
_26190
Position (kb) 5659
5660 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5658.126 kb on + strand, within PS417_26180 at 5658.127 kb on - strand, within PS417_26180 at 5658.583 kb on - strand, within PS417_26180 at 5658.639 kb on + strand, within PS417_26180 at 5658.640 kb on - strand, within PS417_26180 at 5658.690 kb on + strand, within PS417_26180 at 5658.690 kb on + strand, within PS417_26180 at 5658.795 kb on + strand at 5658.796 kb on - strand at 5659.025 kb on - strand at 5659.124 kb on + strand, within PS417_26185 at 5659.124 kb on + strand, within PS417_26185 at 5659.143 kb on - strand, within PS417_26185 at 5659.172 kb on + strand, within PS417_26185 at 5659.172 kb on + strand, within PS417_26185 at 5659.172 kb on + strand, within PS417_26185 at 5659.244 kb on + strand, within PS417_26185 at 5659.245 kb on - strand, within PS417_26185 at 5659.245 kb on - strand, within PS417_26185 at 5659.362 kb on + strand at 5659.362 kb on + strand at 5659.363 kb on - strand at 5659.371 kb on + strand at 5659.737 kb on - strand, within PS417_26190 at 5659.790 kb on + strand, within PS417_26190 at 5659.791 kb on - strand, within PS417_26190 at 5660.313 kb on - strand, within PS417_26190 at 5660.360 kb on + strand, within PS417_26190
Per-strain Table
Position Strand Gene LocusTag Fraction Gentamicin 0.008 mg/ml remove 5,658,126 + PS417_26180 0.69 +1.4 5,658,127 - PS417_26180 0.69 +0.4 5,658,583 - PS417_26180 0.84 +0.1 5,658,639 + PS417_26180 0.86 +0.5 5,658,640 - PS417_26180 0.86 -0.1 5,658,690 + PS417_26180 0.87 +0.0 5,658,690 + PS417_26180 0.87 +2.2 5,658,795 + -1.0 5,658,796 - +1.9 5,659,025 - -2.0 5,659,124 + PS417_26185 0.18 +0.8 5,659,124 + PS417_26185 0.18 +0.0 5,659,143 - PS417_26185 0.24 -1.7 5,659,172 + PS417_26185 0.34 -2.1 5,659,172 + PS417_26185 0.34 -0.8 5,659,172 + PS417_26185 0.34 +0.1 5,659,244 + PS417_26185 0.58 -1.2 5,659,245 - PS417_26185 0.58 -1.2 5,659,245 - PS417_26185 0.58 -2.4 5,659,362 + +0.4 5,659,362 + +0.6 5,659,363 - +0.4 5,659,371 + +1.2 5,659,737 - PS417_26190 0.28 -0.1 5,659,790 + PS417_26190 0.32 +0.4 5,659,791 - PS417_26190 0.32 -0.4 5,660,313 - PS417_26190 0.74 +0.6 5,660,360 + PS417_26190 0.78 +0.4
Or see this region's nucleotide sequence