Experiment: Gentamicin 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_26135 and PS417_26140 overlap by 1 nucleotides PS417_26140 and PS417_26145 are separated by 9 nucleotides PS417_26145 and PS417_26150 are separated by 171 nucleotides
PS417_26135: PS417_26135 - histidine kinase, at 5,648,119 to 5,649,558
_26135
PS417_26140: PS417_26140 - transcriptional regulator, at 5,649,558 to 5,650,226
_26140
PS417_26145: PS417_26145 - hypothetical protein, at 5,650,236 to 5,650,736
_26145
PS417_26150: PS417_26150 - acyltransferase, at 5,650,908 to 5,651,795
_26150
Position (kb) 5649
5650
5651 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5648.707 kb on - strand, within PS417_26135 at 5648.779 kb on + strand, within PS417_26135 at 5648.780 kb on - strand, within PS417_26135 at 5648.780 kb on - strand, within PS417_26135 at 5648.780 kb on - strand, within PS417_26135 at 5648.783 kb on + strand, within PS417_26135 at 5648.784 kb on - strand, within PS417_26135 at 5648.784 kb on - strand, within PS417_26135 at 5648.796 kb on - strand, within PS417_26135 at 5649.032 kb on + strand, within PS417_26135 at 5649.033 kb on - strand, within PS417_26135 at 5649.272 kb on + strand, within PS417_26135 at 5649.272 kb on + strand, within PS417_26135 at 5649.397 kb on - strand, within PS417_26135 at 5649.431 kb on - strand at 5649.431 kb on - strand at 5649.527 kb on + strand at 5649.528 kb on - strand at 5649.528 kb on - strand at 5649.577 kb on + strand at 5649.578 kb on - strand at 5649.578 kb on - strand at 5649.934 kb on + strand, within PS417_26140 at 5649.934 kb on + strand, within PS417_26140 at 5649.934 kb on + strand, within PS417_26140 at 5649.934 kb on + strand, within PS417_26140 at 5649.935 kb on - strand, within PS417_26140 at 5649.935 kb on - strand, within PS417_26140 at 5650.217 kb on + strand at 5650.261 kb on + strand at 5650.654 kb on + strand, within PS417_26145 at 5650.654 kb on + strand, within PS417_26145 at 5650.655 kb on - strand, within PS417_26145 at 5650.655 kb on - strand, within PS417_26145 at 5650.670 kb on - strand, within PS417_26145 at 5650.791 kb on + strand at 5650.791 kb on + strand at 5650.792 kb on - strand at 5650.792 kb on - strand at 5650.792 kb on - strand at 5650.792 kb on - strand at 5650.857 kb on + strand at 5650.949 kb on - strand at 5650.949 kb on - strand at 5651.031 kb on + strand, within PS417_26150 at 5651.032 kb on - strand, within PS417_26150 at 5651.032 kb on - strand, within PS417_26150 at 5651.032 kb on - strand, within PS417_26150 at 5651.151 kb on - strand, within PS417_26150 at 5651.158 kb on - strand, within PS417_26150
Per-strain Table
Position Strand Gene LocusTag Fraction Gentamicin 0.008 mg/ml remove 5,648,707 - PS417_26135 0.41 -1.5 5,648,779 + PS417_26135 0.46 -0.2 5,648,780 - PS417_26135 0.46 +0.2 5,648,780 - PS417_26135 0.46 -0.4 5,648,780 - PS417_26135 0.46 +0.2 5,648,783 + PS417_26135 0.46 +0.5 5,648,784 - PS417_26135 0.46 +0.3 5,648,784 - PS417_26135 0.46 -0.5 5,648,796 - PS417_26135 0.47 -0.3 5,649,032 + PS417_26135 0.63 -0.7 5,649,033 - PS417_26135 0.63 +0.5 5,649,272 + PS417_26135 0.80 -0.8 5,649,272 + PS417_26135 0.80 -0.4 5,649,397 - PS417_26135 0.89 +0.2 5,649,431 - +0.6 5,649,431 - +0.2 5,649,527 + -2.2 5,649,528 - +0.6 5,649,528 - -1.1 5,649,577 + -1.2 5,649,578 - -0.5 5,649,578 - -3.2 5,649,934 + PS417_26140 0.56 +1.5 5,649,934 + PS417_26140 0.56 +1.7 5,649,934 + PS417_26140 0.56 +0.4 5,649,934 + PS417_26140 0.56 -0.5 5,649,935 - PS417_26140 0.56 -0.2 5,649,935 - PS417_26140 0.56 +1.2 5,650,217 + +1.2 5,650,261 + +0.6 5,650,654 + PS417_26145 0.83 +1.1 5,650,654 + PS417_26145 0.83 +0.5 5,650,655 - PS417_26145 0.84 +2.3 5,650,655 - PS417_26145 0.84 +0.8 5,650,670 - PS417_26145 0.87 -1.3 5,650,791 + -0.1 5,650,791 + -0.1 5,650,792 - +0.8 5,650,792 - +0.1 5,650,792 - +0.2 5,650,792 - -3.5 5,650,857 + +0.5 5,650,949 - -0.2 5,650,949 - +1.3 5,651,031 + PS417_26150 0.14 +2.0 5,651,032 - PS417_26150 0.14 -1.3 5,651,032 - PS417_26150 0.14 -0.3 5,651,032 - PS417_26150 0.14 +0.1 5,651,151 - PS417_26150 0.27 -0.5 5,651,158 - PS417_26150 0.28 -1.5
Or see this region's nucleotide sequence