Experiment: Gentamicin 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_26105 and PS417_26110 overlap by 4 nucleotides PS417_26110 and PS417_26115 are separated by 107 nucleotides PS417_26115 and PS417_26120 are separated by 79 nucleotides PS417_26120 and PS417_26125 are separated by 34 nucleotides
PS417_26105: PS417_26105 - ABC transporter permease, at 5,642,979 to 5,643,698
_26105
PS417_26110: PS417_26110 - ABC transporter permease, at 5,643,695 to 5,644,405
_26110
PS417_26115: PS417_26115 - glutamine ABC transporter ATP-binding protein, at 5,644,513 to 5,645,238
_26115
PS417_26120: PS417_26120 - hypothetical protein, at 5,645,318 to 5,645,935
_26120
PS417_26125: PS417_26125 - glutathione S-transferase, at 5,645,970 to 5,646,599
_26125
Position (kb) 5644
5645
5646 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 5643.540 kb on - strand, within PS417_26105 at 5643.890 kb on + strand, within PS417_26110 at 5643.890 kb on + strand, within PS417_26110 at 5643.890 kb on + strand, within PS417_26110 at 5643.890 kb on + strand, within PS417_26110 at 5643.890 kb on + strand, within PS417_26110 at 5643.890 kb on + strand, within PS417_26110 at 5643.890 kb on + strand, within PS417_26110 at 5643.890 kb on + strand, within PS417_26110 at 5643.890 kb on + strand, within PS417_26110 at 5643.890 kb on + strand, within PS417_26110 at 5643.890 kb on + strand, within PS417_26110 at 5643.890 kb on + strand, within PS417_26110 at 5643.890 kb on + strand, within PS417_26110 at 5643.890 kb on + strand, within PS417_26110 at 5643.890 kb on + strand, within PS417_26110 at 5643.890 kb on + strand, within PS417_26110 at 5643.891 kb on - strand, within PS417_26110 at 5643.891 kb on - strand, within PS417_26110 at 5643.891 kb on - strand, within PS417_26110 at 5643.891 kb on - strand, within PS417_26110 at 5643.891 kb on - strand, within PS417_26110 at 5643.891 kb on - strand, within PS417_26110 at 5643.891 kb on - strand, within PS417_26110 at 5643.891 kb on - strand, within PS417_26110 at 5643.891 kb on - strand, within PS417_26110 at 5643.892 kb on + strand, within PS417_26110 at 5643.892 kb on + strand, within PS417_26110 at 5643.892 kb on + strand, within PS417_26110 at 5643.892 kb on + strand, within PS417_26110 at 5643.892 kb on + strand, within PS417_26110 at 5643.892 kb on + strand, within PS417_26110 at 5643.892 kb on + strand, within PS417_26110 at 5643.892 kb on + strand, within PS417_26110 at 5643.892 kb on + strand, within PS417_26110 at 5643.892 kb on + strand, within PS417_26110 at 5643.893 kb on - strand, within PS417_26110 at 5643.893 kb on - strand, within PS417_26110 at 5643.893 kb on - strand, within PS417_26110 at 5643.893 kb on - strand, within PS417_26110 at 5643.896 kb on + strand, within PS417_26110 at 5643.896 kb on + strand, within PS417_26110 at 5643.897 kb on - strand, within PS417_26110 at 5643.897 kb on - strand, within PS417_26110 at 5643.897 kb on - strand, within PS417_26110 at 5643.897 kb on - strand, within PS417_26110 at 5643.941 kb on + strand, within PS417_26110 at 5643.941 kb on + strand, within PS417_26110 at 5643.941 kb on + strand, within PS417_26110 at 5643.945 kb on - strand, within PS417_26110 at 5643.981 kb on + strand, within PS417_26110 at 5643.982 kb on - strand, within PS417_26110 at 5643.982 kb on - strand, within PS417_26110 at 5644.053 kb on - strand, within PS417_26110 at 5644.311 kb on - strand, within PS417_26110 at 5644.331 kb on + strand, within PS417_26110 at 5644.331 kb on + strand, within PS417_26110 at 5644.331 kb on + strand, within PS417_26110 at 5644.332 kb on - strand, within PS417_26110 at 5644.332 kb on - strand, within PS417_26110 at 5644.332 kb on - strand, within PS417_26110 at 5644.366 kb on + strand at 5644.559 kb on + strand at 5644.731 kb on + strand, within PS417_26115 at 5644.732 kb on - strand, within PS417_26115 at 5644.732 kb on - strand, within PS417_26115 at 5644.910 kb on - strand, within PS417_26115 at 5645.151 kb on + strand, within PS417_26115 at 5645.151 kb on + strand, within PS417_26115 at 5645.281 kb on - strand at 5645.299 kb on + strand at 5645.299 kb on + strand at 5645.300 kb on - strand at 5645.519 kb on + strand, within PS417_26120 at 5645.550 kb on + strand at 5645.811 kb on + strand, within PS417_26120 at 5645.812 kb on - strand, within PS417_26120 at 5645.898 kb on - strand at 5645.903 kb on + strand at 5645.904 kb on - strand at 5646.024 kb on - strand at 5646.202 kb on - strand, within PS417_26125
Per-strain Table
Position Strand Gene LocusTag Fraction Gentamicin 0.008 mg/ml remove 5,643,540 - PS417_26105 0.78 -0.1 5,643,890 + PS417_26110 0.27 +1.2 5,643,890 + PS417_26110 0.27 -0.1 5,643,890 + PS417_26110 0.27 -0.1 5,643,890 + PS417_26110 0.27 -0.4 5,643,890 + PS417_26110 0.27 +1.9 5,643,890 + PS417_26110 0.27 -0.8 5,643,890 + PS417_26110 0.27 +1.5 5,643,890 + PS417_26110 0.27 -1.8 5,643,890 + PS417_26110 0.27 -0.1 5,643,890 + PS417_26110 0.27 -0.1 5,643,890 + PS417_26110 0.27 -0.3 5,643,890 + PS417_26110 0.27 -2.6 5,643,890 + PS417_26110 0.27 -2.0 5,643,890 + PS417_26110 0.27 -0.1 5,643,890 + PS417_26110 0.27 -0.3 5,643,890 + PS417_26110 0.27 +1.0 5,643,891 - PS417_26110 0.28 -0.2 5,643,891 - PS417_26110 0.28 -2.0 5,643,891 - PS417_26110 0.28 -2.2 5,643,891 - PS417_26110 0.28 -1.6 5,643,891 - PS417_26110 0.28 -0.3 5,643,891 - PS417_26110 0.28 -2.5 5,643,891 - PS417_26110 0.28 -2.0 5,643,891 - PS417_26110 0.28 -2.3 5,643,891 - PS417_26110 0.28 -0.8 5,643,892 + PS417_26110 0.28 -0.6 5,643,892 + PS417_26110 0.28 +0.3 5,643,892 + PS417_26110 0.28 -0.4 5,643,892 + PS417_26110 0.28 -1.2 5,643,892 + PS417_26110 0.28 -0.8 5,643,892 + PS417_26110 0.28 +0.3 5,643,892 + PS417_26110 0.28 -1.0 5,643,892 + PS417_26110 0.28 +0.5 5,643,892 + PS417_26110 0.28 +1.2 5,643,892 + PS417_26110 0.28 +0.8 5,643,893 - PS417_26110 0.28 -0.2 5,643,893 - PS417_26110 0.28 -1.4 5,643,893 - PS417_26110 0.28 +0.8 5,643,893 - PS417_26110 0.28 -2.2 5,643,896 + PS417_26110 0.28 -0.2 5,643,896 + PS417_26110 0.28 -0.7 5,643,897 - PS417_26110 0.28 -1.2 5,643,897 - PS417_26110 0.28 -1.5 5,643,897 - PS417_26110 0.28 -1.5 5,643,897 - PS417_26110 0.28 -2.1 5,643,941 + PS417_26110 0.35 -0.1 5,643,941 + PS417_26110 0.35 +0.4 5,643,941 + PS417_26110 0.35 +0.1 5,643,945 - PS417_26110 0.35 -0.8 5,643,981 + PS417_26110 0.40 -0.7 5,643,982 - PS417_26110 0.40 +0.2 5,643,982 - PS417_26110 0.40 -0.5 5,644,053 - PS417_26110 0.50 +1.2 5,644,311 - PS417_26110 0.87 -0.1 5,644,331 + PS417_26110 0.89 -3.2 5,644,331 + PS417_26110 0.89 -0.5 5,644,331 + PS417_26110 0.89 -1.8 5,644,332 - PS417_26110 0.90 -1.0 5,644,332 - PS417_26110 0.90 -0.6 5,644,332 - PS417_26110 0.90 -0.4 5,644,366 + -2.6 5,644,559 + +1.0 5,644,731 + PS417_26115 0.30 -1.7 5,644,732 - PS417_26115 0.30 -2.0 5,644,732 - PS417_26115 0.30 -0.4 5,644,910 - PS417_26115 0.55 -0.4 5,645,151 + PS417_26115 0.88 -0.1 5,645,151 + PS417_26115 0.88 -0.1 5,645,281 - -0.0 5,645,299 + +0.3 5,645,299 + +1.4 5,645,300 - -0.4 5,645,519 + PS417_26120 0.33 +2.3 5,645,550 + +0.5 5,645,811 + PS417_26120 0.80 -0.6 5,645,812 - PS417_26120 0.80 -2.3 5,645,898 - +2.9 5,645,903 + +0.1 5,645,904 - -0.7 5,646,024 - -0.1 5,646,202 - PS417_26125 0.37 -0.2
Or see this region's nucleotide sequence