Experiment: Gentamicin 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_02575 and PS417_02580 are separated by 18 nucleotides PS417_02580 and PS417_02585 are separated by 109 nucleotides PS417_02585 and PS417_02590 are separated by 96 nucleotides
PS417_02575: PS417_02575 - membrane protein, at 586,359 to 587,252
_02575
PS417_02580: PS417_02580 - 50S ribosomal protein L9, at 587,271 to 587,717
_02580
PS417_02585: PS417_02585 - DNA helicase, at 587,827 to 589,224
_02585
PS417_02590: PS417_02590 - hypothetical protein, at 589,321 to 591,624
_02590
Position (kb) 587
588
589
590 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 586.884 kb on + strand, within PS417_02575 at 587.121 kb on + strand, within PS417_02575 at 587.121 kb on + strand, within PS417_02575 at 587.121 kb on + strand, within PS417_02575 at 587.121 kb on + strand, within PS417_02575 at 589.201 kb on + strand at 589.201 kb on + strand at 589.276 kb on + strand at 589.276 kb on + strand at 589.277 kb on - strand at 589.277 kb on - strand at 589.278 kb on + strand at 589.278 kb on + strand at 589.340 kb on + strand at 589.357 kb on + strand at 589.357 kb on + strand at 589.357 kb on + strand at 589.358 kb on - strand at 589.465 kb on + strand at 589.465 kb on + strand at 589.682 kb on - strand, within PS417_02590 at 589.682 kb on - strand, within PS417_02590 at 589.733 kb on - strand at 589.775 kb on + strand, within PS417_02590 at 589.823 kb on - strand, within PS417_02590 at 589.990 kb on - strand, within PS417_02590
Per-strain Table
Position Strand Gene LocusTag Fraction Gentamicin 0.008 mg/ml remove 586,884 + PS417_02575 0.59 -1.1 587,121 + PS417_02575 0.85 +3.6 587,121 + PS417_02575 0.85 -1.0 587,121 + PS417_02575 0.85 -1.2 587,121 + PS417_02575 0.85 -0.1 589,201 + -2.0 589,201 + -0.1 589,276 + +0.2 589,276 + -0.4 589,277 - +1.5 589,277 - +1.0 589,278 + -0.8 589,278 + +1.4 589,340 + +2.7 589,357 + +0.3 589,357 + +1.8 589,357 + +1.5 589,358 - -1.3 589,465 + -1.3 589,465 + +0.1 589,682 - PS417_02590 0.16 +0.7 589,682 - PS417_02590 0.16 -1.2 589,733 - -1.1 589,775 + PS417_02590 0.20 -1.1 589,823 - PS417_02590 0.22 +0.9 589,990 - PS417_02590 0.29 +0.1
Or see this region's nucleotide sequence