Experiment: Gentamicin 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_25155 and PS417_25160 are separated by 708 nucleotides PS417_25160 and PS417_25165 are separated by 400 nucleotides
PS417_25155: PS417_25155 - hypothetical protein, at 5,452,443 to 5,452,703
_25155
PS417_25160: PS417_25160 - hypothetical protein, at 5,453,412 to 5,453,945
_25160
PS417_25165: PS417_25165 - chitin-binding protein, at 5,454,346 to 5,454,981
_25165
Position (kb) 5453
5454 Strain fitness (log2 ratio) -2
-1
0
1 at 5452.518 kb on - strand, within PS417_25155 at 5452.518 kb on - strand, within PS417_25155 at 5452.694 kb on - strand at 5452.795 kb on + strand at 5452.868 kb on + strand at 5452.994 kb on + strand at 5452.995 kb on - strand at 5453.145 kb on + strand at 5453.279 kb on + strand at 5453.295 kb on + strand at 5453.296 kb on - strand at 5453.302 kb on - strand at 5453.330 kb on - strand at 5453.475 kb on + strand, within PS417_25160 at 5453.488 kb on + strand, within PS417_25160 at 5453.552 kb on + strand, within PS417_25160 at 5453.618 kb on + strand, within PS417_25160 at 5453.618 kb on + strand, within PS417_25160 at 5453.646 kb on + strand, within PS417_25160 at 5453.672 kb on - strand at 5453.722 kb on + strand, within PS417_25160 at 5453.722 kb on + strand, within PS417_25160 at 5453.723 kb on - strand, within PS417_25160 at 5453.723 kb on - strand, within PS417_25160 at 5453.723 kb on - strand, within PS417_25160 at 5453.723 kb on - strand, within PS417_25160 at 5453.756 kb on + strand, within PS417_25160 at 5453.757 kb on - strand, within PS417_25160 at 5453.757 kb on - strand, within PS417_25160 at 5453.757 kb on - strand, within PS417_25160 at 5453.757 kb on - strand, within PS417_25160 at 5453.758 kb on + strand, within PS417_25160 at 5453.758 kb on + strand, within PS417_25160 at 5453.758 kb on + strand, within PS417_25160 at 5453.759 kb on - strand, within PS417_25160 at 5453.759 kb on - strand, within PS417_25160 at 5453.784 kb on + strand, within PS417_25160 at 5453.802 kb on - strand, within PS417_25160 at 5453.837 kb on + strand, within PS417_25160 at 5453.861 kb on + strand, within PS417_25160 at 5453.862 kb on - strand, within PS417_25160 at 5453.948 kb on + strand at 5453.966 kb on + strand at 5453.970 kb on - strand at 5454.138 kb on + strand at 5454.150 kb on - strand at 5454.150 kb on - strand at 5454.221 kb on - strand at 5454.331 kb on + strand at 5454.525 kb on - strand at 5454.615 kb on + strand, within PS417_25165 at 5454.771 kb on - strand, within PS417_25165 at 5454.771 kb on - strand, within PS417_25165 at 5454.771 kb on - strand, within PS417_25165 at 5454.771 kb on - strand, within PS417_25165 at 5454.801 kb on + strand, within PS417_25165
Per-strain Table
Position Strand Gene LocusTag Fraction Gentamicin 0.008 mg/ml remove 5,452,518 - PS417_25155 0.29 -1.9 5,452,518 - PS417_25155 0.29 -0.6 5,452,694 - +0.2 5,452,795 + -1.0 5,452,868 + +1.7 5,452,994 + -0.5 5,452,995 - +0.1 5,453,145 + -0.8 5,453,279 + -0.5 5,453,295 + -0.0 5,453,296 - -1.4 5,453,302 - +0.7 5,453,330 - -0.6 5,453,475 + PS417_25160 0.12 -0.2 5,453,488 + PS417_25160 0.14 +0.3 5,453,552 + PS417_25160 0.26 -2.0 5,453,618 + PS417_25160 0.39 +1.3 5,453,618 + PS417_25160 0.39 +0.4 5,453,646 + PS417_25160 0.44 -0.7 5,453,672 - -0.9 5,453,722 + PS417_25160 0.58 -2.2 5,453,722 + PS417_25160 0.58 +0.4 5,453,723 - PS417_25160 0.58 -1.0 5,453,723 - PS417_25160 0.58 -2.0 5,453,723 - PS417_25160 0.58 +0.0 5,453,723 - PS417_25160 0.58 -1.1 5,453,756 + PS417_25160 0.64 +0.3 5,453,757 - PS417_25160 0.65 -0.9 5,453,757 - PS417_25160 0.65 -0.1 5,453,757 - PS417_25160 0.65 -0.5 5,453,757 - PS417_25160 0.65 -0.0 5,453,758 + PS417_25160 0.65 -1.6 5,453,758 + PS417_25160 0.65 -0.4 5,453,758 + PS417_25160 0.65 -1.8 5,453,759 - PS417_25160 0.65 -0.7 5,453,759 - PS417_25160 0.65 -1.3 5,453,784 + PS417_25160 0.70 -1.7 5,453,802 - PS417_25160 0.73 +0.3 5,453,837 + PS417_25160 0.80 -0.1 5,453,861 + PS417_25160 0.84 +0.3 5,453,862 - PS417_25160 0.84 +0.6 5,453,948 + +1.0 5,453,966 + -1.4 5,453,970 - -0.8 5,454,138 + -0.3 5,454,150 - +0.0 5,454,150 - -1.7 5,454,221 - +1.2 5,454,331 + +0.6 5,454,525 - -0.9 5,454,615 + PS417_25165 0.42 -1.3 5,454,771 - PS417_25165 0.67 -1.9 5,454,771 - PS417_25165 0.67 -0.7 5,454,771 - PS417_25165 0.67 +0.2 5,454,771 - PS417_25165 0.67 -1.6 5,454,801 + PS417_25165 0.72 +0.8
Or see this region's nucleotide sequence