Experiment: Gentamicin 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_24615 and PS417_24620 are separated by 128 nucleotides PS417_24620 and PS417_24625 are separated by 131 nucleotides PS417_24625 and PS417_24630 are separated by 230 nucleotides
PS417_24615: PS417_24615 - hypothetical protein, at 5,342,168 to 5,342,722
_24615
PS417_24620: PS417_24620 - hypothetical protein, at 5,342,851 to 5,343,177
_24620
PS417_24625: PS417_24625 - (dimethylallyl)adenosine tRNA methylthiotransferase, at 5,343,309 to 5,344,637
_24625
PS417_24630: PS417_24630 - ATP-binding protein, at 5,344,868 to 5,345,872
_24630
Position (kb) 5343
5344
5345 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 5342.432 kb on + strand, within PS417_24615 at 5342.666 kb on + strand, within PS417_24615 at 5342.667 kb on - strand at 5342.852 kb on + strand at 5343.095 kb on + strand, within PS417_24620 at 5343.095 kb on + strand, within PS417_24620 at 5343.096 kb on - strand, within PS417_24620 at 5343.096 kb on - strand, within PS417_24620 at 5343.111 kb on - strand, within PS417_24620 at 5343.151 kb on - strand at 5343.152 kb on + strand at 5343.152 kb on + strand at 5343.152 kb on + strand at 5343.152 kb on + strand at 5343.152 kb on + strand at 5343.152 kb on + strand at 5343.152 kb on + strand at 5343.152 kb on + strand at 5343.152 kb on + strand at 5343.153 kb on - strand at 5343.153 kb on - strand at 5343.153 kb on - strand at 5343.204 kb on + strand at 5343.221 kb on + strand at 5343.222 kb on - strand at 5343.222 kb on - strand at 5343.223 kb on + strand at 5343.223 kb on + strand at 5343.272 kb on - strand at 5343.272 kb on - strand at 5343.272 kb on - strand at 5343.272 kb on - strand at 5343.272 kb on - strand at 5343.324 kb on + strand at 5343.324 kb on + strand at 5343.324 kb on + strand at 5343.325 kb on - strand at 5343.325 kb on - strand at 5343.487 kb on - strand, within PS417_24625 at 5343.601 kb on - strand, within PS417_24625 at 5343.786 kb on + strand, within PS417_24625 at 5343.786 kb on + strand, within PS417_24625 at 5343.786 kb on + strand at 5343.787 kb on - strand, within PS417_24625 at 5344.320 kb on + strand, within PS417_24625 at 5344.321 kb on - strand, within PS417_24625 at 5344.695 kb on + strand at 5344.695 kb on + strand at 5344.695 kb on + strand at 5344.695 kb on - strand at 5344.696 kb on - strand at 5344.706 kb on + strand at 5344.706 kb on + strand at 5344.706 kb on + strand at 5344.707 kb on - strand at 5344.707 kb on - strand at 5344.707 kb on - strand at 5344.707 kb on - strand at 5344.707 kb on - strand at 5344.788 kb on + strand at 5344.792 kb on + strand at 5344.792 kb on + strand at 5344.792 kb on + strand at 5344.792 kb on + strand at 5344.793 kb on - strand at 5344.793 kb on - strand at 5345.123 kb on + strand, within PS417_24630 at 5345.453 kb on + strand, within PS417_24630 at 5345.537 kb on + strand, within PS417_24630
Per-strain Table
Position Strand Gene LocusTag Fraction Gentamicin 0.008 mg/ml remove 5,342,432 + PS417_24615 0.48 +2.3 5,342,666 + PS417_24615 0.90 -1.1 5,342,667 - -1.0 5,342,852 + +0.0 5,343,095 + PS417_24620 0.75 -2.4 5,343,095 + PS417_24620 0.75 +1.2 5,343,096 - PS417_24620 0.75 +0.8 5,343,096 - PS417_24620 0.75 +0.5 5,343,111 - PS417_24620 0.80 -2.2 5,343,151 - -1.4 5,343,152 + -1.0 5,343,152 + +0.1 5,343,152 + -1.0 5,343,152 + +0.2 5,343,152 + +0.5 5,343,152 + +0.5 5,343,152 + +2.5 5,343,152 + -1.1 5,343,152 + +2.3 5,343,153 - +0.7 5,343,153 - +0.4 5,343,153 - -1.9 5,343,204 + +0.9 5,343,221 + -2.0 5,343,222 - -3.1 5,343,222 - -0.9 5,343,223 + +1.1 5,343,223 + -0.1 5,343,272 - -0.9 5,343,272 - +0.2 5,343,272 - +1.5 5,343,272 - -1.9 5,343,272 - -0.1 5,343,324 + +1.1 5,343,324 + -0.8 5,343,324 + +0.5 5,343,325 - +2.6 5,343,325 - +0.9 5,343,487 - PS417_24625 0.13 +1.9 5,343,601 - PS417_24625 0.22 -0.2 5,343,786 + PS417_24625 0.36 +1.3 5,343,786 + PS417_24625 0.36 +0.4 5,343,786 + +1.5 5,343,787 - PS417_24625 0.36 -1.9 5,344,320 + PS417_24625 0.76 +1.1 5,344,321 - PS417_24625 0.76 +1.7 5,344,695 + +0.5 5,344,695 + +1.8 5,344,695 + +0.2 5,344,695 - -1.5 5,344,696 - -4.1 5,344,706 + +0.6 5,344,706 + -0.7 5,344,706 + -1.5 5,344,707 - +1.5 5,344,707 - -1.7 5,344,707 - -1.0 5,344,707 - -0.7 5,344,707 - -0.7 5,344,788 + +0.5 5,344,792 + -0.2 5,344,792 + +0.9 5,344,792 + -1.1 5,344,792 + +2.9 5,344,793 - -0.4 5,344,793 - -3.1 5,345,123 + PS417_24630 0.25 -1.9 5,345,453 + PS417_24630 0.58 -0.3 5,345,537 + PS417_24630 0.67 -0.4
Or see this region's nucleotide sequence