Strain Fitness in Pseudomonas simiae WCS417 around PS417_24410

Experiment: Gentamicin 0.008 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Gentamicin 0.008 mg/ml
5,298,334	+				+0.1
5,298,334	+				+0.8
5,298,335	-				-0.2
5,298,349	+				-0.8
5,298,350	-				+0.0
5,298,350	-				-1.5
5,298,350	-				-0.4
5,298,419	+				+2.3
5,298,421	+				+2.4
5,298,421	+				-0.4
5,298,422	-				-0.5
5,298,422	-				+0.3
5,298,556	-				-1.1
5,298,580	-				-1.6
5,298,580	-				-0.9
5,298,835	+		PS417_24405	0.33	-0.2
5,298,850	-		PS417_24405	0.36	-0.9
5,298,850	-		PS417_24405	0.36	-0.5
5,298,928	+		PS417_24405	0.48	+0.1
5,298,998	+		PS417_24405	0.60	-1.2
5,298,998	+		PS417_24405	0.60	-0.3
5,299,024	+				-0.2
5,299,025	-		PS417_24405	0.64	+1.1
5,299,025	-		PS417_24405	0.64	+0.4
5,299,025	-		PS417_24405	0.64	-0.7
5,299,172	-		PS417_24405	0.88	-0.1
5,299,236	-				+0.2
5,299,411	+				+1.9
5,299,411	+				+2.0
5,299,480	+				-0.2
5,299,560	+				-0.2
5,299,560	+				-0.3
5,299,567	+				-1.4
5,299,597	-				+0.8
5,299,597	-		PS417_24410	0.10	-0.4
5,299,828	+		PS417_24410	0.19	+0.5
5,299,915	+		PS417_24410	0.22	+0.7
5,299,916	-		PS417_24410	0.22	+0.4
5,299,973	+		PS417_24410	0.24	-2.7
5,299,975	+		PS417_24410	0.24	-2.6
5,299,975	+		PS417_24410	0.24	-1.9
5,299,975	+		PS417_24410	0.24	-0.9
5,299,975	+		PS417_24410	0.24	-0.1
5,299,976	-		PS417_24410	0.24	-1.1
5,299,976	-		PS417_24410	0.24	+0.3
5,299,976	-		PS417_24410	0.24	-0.5
5,299,976	-		PS417_24410	0.24	+1.1
5,300,005	+		PS417_24410	0.25	+0.2
5,300,006	-		PS417_24410	0.25	+0.3
5,300,198	-		PS417_24410	0.33	-2.1
5,300,198	-				+0.7
5,300,287	+		PS417_24410	0.36	+0.9
5,300,287	+		PS417_24410	0.36	-2.0
5,300,288	-		PS417_24410	0.36	-1.3
5,300,288	-		PS417_24410	0.36	-1.6
5,300,288	-				+4.9
5,300,420	-		PS417_24410	0.41	+0.3
5,300,563	+		PS417_24410	0.46	-0.2
5,300,564	-		PS417_24410	0.46	-1.4
5,300,564	-		PS417_24410	0.46	-0.0
5,300,564	-		PS417_24410	0.46	+1.7
5,300,629	+		PS417_24410	0.49	+1.9
5,300,629	+		PS417_24410	0.49	+0.4
5,300,630	-		PS417_24410	0.49	-0.0
5,300,630	-		PS417_24410	0.49	-0.6
5,300,630	-		PS417_24410	0.49	-0.3
5,300,713	+		PS417_24410	0.52	+1.3
5,300,755	+		PS417_24410	0.54	-0.7
5,300,756	-		PS417_24410	0.54	-3.3
5,300,756	-		PS417_24410	0.54	-0.6
5,300,756	-		PS417_24410	0.54	+0.3
5,300,756	-				+3.6
5,300,762	-		PS417_24410	0.54	+0.4
5,300,762	-		PS417_24410	0.54	-1.0
5,300,815	-		PS417_24410	0.56	-1.5
5,300,815	-		PS417_24410	0.56	+0.1
5,301,049	+		PS417_24410	0.65	+1.4
5,301,291	+		PS417_24410	0.74	-0.1
5,301,291	+		PS417_24410	0.74	-0.4
5,301,291	+		PS417_24410	0.74	-0.6
5,301,291	+		PS417_24410	0.74	-1.4
5,301,292	-		PS417_24410	0.74	-0.2
5,301,325	+		PS417_24410	0.75	-0.0
5,301,325	+		PS417_24410	0.75	-1.3
5,301,325	+		PS417_24410	0.75	-0.7
5,301,325	+		PS417_24410	0.75	+1.1
5,301,325	+		PS417_24410	0.75	+0.4
5,301,326	-		PS417_24410	0.75	-0.9
5,301,326	-		PS417_24410	0.75	-1.4
5,301,426	-		PS417_24410	0.79	-2.9
5,301,565	+		PS417_24410	0.84	-0.2
5,301,565	+		PS417_24410	0.84	-0.7
5,301,566	-		PS417_24410	0.84	-0.3
5,301,727	+				-0.7
5,301,727	+				+0.2
5,301,728	-				-0.1
5,301,728	-				+0.1
5,301,746	+				-3.1
5,302,124	+				+0.4
5,302,124	+				+2.0
5,302,125	-				+0.4
5,302,125	-				+0.1
5,302,125	-				-1.6
5,302,361	-		PS417_24415	0.24	-0.2
5,302,403	+		PS417_24415	0.28	+1.6
5,302,403	+		PS417_24415	0.28	+0.1
5,302,403	+		PS417_24415	0.28	+0.4
5,302,670	+		PS417_24415	0.55	+0.1
5,302,671	-		PS417_24415	0.55	+0.1
5,302,671	-		PS417_24415	0.55	-0.4
5,302,760	+		PS417_24415	0.64	+1.0
5,302,761	-		PS417_24415	0.64	-0.4
5,302,761	-		PS417_24415	0.64	+0.3
5,302,774	-				+1.4
5,302,932	-		PS417_24415	0.81	+2.2