Strain Fitness in Pseudomonas simiae WCS417 around PS417_24010

Experiment: Gentamicin 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_24005 and PS417_24010 are separated by 16 nucleotidesPS417_24010 and PS417_24015 are separated by 8 nucleotides PS417_24005: PS417_24005 - phosphoglucosamine mutase, at 5,196,631 to 5,197,968 _24005 PS417_24010: PS417_24010 - dihydropteroate synthase, at 5,197,985 to 5,198,836 _24010 PS417_24015: PS417_24015 - ATP-dependent metalloprotease, at 5,198,845 to 5,200,755 _24015 Position (kb) 5197 5198 5199Strain fitness (log2 ratio) -3 -2 -1 0 1at 5197.969 kb on - strandat 5197.969 kb on - strandat 5197.969 kb on - strandat 5197.969 kb on - strandat 5198.847 kb on - strandat 5198.847 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Gentamicin 0.008 mg/ml
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5,197,969 - -1.2
5,197,969 - -0.5
5,197,969 - -0.2
5,197,969 - -3.0
5,198,847 - -1.3
5,198,847 - +0.4

Or see this region's nucleotide sequence