Strain Fitness in Pseudomonas simiae WCS417 around PS417_23960

Experiment: Gentamicin 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_23950 and PS417_23955 are separated by 195 nucleotidesPS417_23955 and PS417_23960 are separated by 115 nucleotidesPS417_23960 and PS417_23965 are separated by 3 nucleotidesPS417_23965 and PS417_23970 are separated by 159 nucleotides PS417_23950: PS417_23950 - polynucleotide phosphorylase/polyadenylase, at 5,186,297 to 5,188,402 _23950 PS417_23955: PS417_23955 - 30S ribosomal protein S15, at 5,188,598 to 5,188,867 _23955 PS417_23960: PS417_23960 - pseudouridine synthase, at 5,188,983 to 5,189,900 _23960 PS417_23965: PS417_23965 - ribosome-binding factor A, at 5,189,904 to 5,190,299 _23965 PS417_23970: PS417_23970 - translation initiation factor IF-2, at 5,190,459 to 5,192,984 _23970 Position (kb) 5188 5189 5190Strain fitness (log2 ratio) -3 -2 -1 0 1at 5188.439 kb on - strandat 5188.439 kb on - strandat 5188.496 kb on - strandat 5189.840 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Gentamicin 0.008 mg/ml
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5,188,439 - -1.6
5,188,439 - -2.9
5,188,496 - -1.5
5,189,840 + -1.9

Or see this region's nucleotide sequence