Strain Fitness in Pseudomonas simiae WCS417 around PS417_23765
Experiment: Gentamicin 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
| Position | Strand | Gene | LocusTag | Fraction | Gentamicin 0.008 mg/ml |
|---|---|---|---|---|---|
| remove | |||||
| 5,136,508 | - | PS417_23760 | 0.33 | -1.6 | |
| 5,136,994 | + | PS417_23760 | 0.72 | -1.3 | |
| 5,137,176 | + | PS417_23760 | 0.86 | -0.4 | |
| 5,137,176 | + | PS417_23760 | 0.86 | -1.7 | |
| 5,137,177 | - | PS417_23760 | 0.86 | -0.3 | |
| 5,137,219 | - | PS417_23760 | 0.90 | +0.6 | |
| 5,137,400 | - | -0.6 | |||
| 5,137,580 | + | PS417_23765 | 0.41 | +1.6 | |
| 5,137,580 | + | PS417_23765 | 0.41 | -1.5 | |
| 5,137,581 | - | PS417_23765 | 0.41 | -1.7 | |
| 5,137,707 | + | PS417_23765 | 0.63 | -3.3 | |
| 5,137,708 | - | PS417_23765 | 0.63 | -2.2 | |
| 5,137,708 | - | PS417_23765 | 0.63 | -0.8 | |
| 5,137,749 | - | PS417_23765 | 0.70 | -1.5 | |
| 5,137,749 | - | PS417_23765 | 0.70 | -1.9 | |
| 5,137,867 | + | +0.2 | |||
| 5,137,868 | - | -1.2 | |||
| 5,137,947 | - | -2.3 | |||
| 5,138,049 | + | -0.1 | |||
| 5,138,050 | - | -0.2 | |||
| 5,138,125 | + | -0.2 | |||
| 5,138,126 | - | +1.2 | |||
| 5,138,205 | + | -2.2 | |||
| 5,138,715 | + | PS417_23770 | 0.31 | -4.3 |
Or see this region's nucleotide sequence