Strain Fitness in Pseudomonas simiae WCS417 around PS417_23225
Experiment: Gentamicin 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Gentamicin 0.008 mg/ml |
---|---|---|---|---|---|
remove | |||||
5,029,472 | - | +0.7 | |||
5,029,486 | - | +0.2 | |||
5,030,541 | - | PS417_23225 | 0.20 | +0.7 | |
5,030,612 | + | PS417_23225 | 0.33 | -1.8 | |
5,030,613 | - | PS417_23225 | 0.33 | +0.0 | |
5,030,613 | - | PS417_23225 | 0.33 | +1.0 | |
5,030,616 | + | PS417_23225 | 0.34 | +0.7 | |
5,030,617 | - | PS417_23225 | 0.34 | -1.3 | |
5,030,697 | + | PS417_23225 | 0.48 | +0.1 | |
5,030,749 | + | PS417_23225 | 0.58 | +2.4 | |
5,030,750 | - | PS417_23225 | 0.58 | -1.0 | |
5,030,836 | + | PS417_23225 | 0.74 | +1.0 | |
5,030,836 | + | PS417_23225 | 0.74 | +1.1 | |
5,030,877 | - | PS417_23225 | 0.82 | +0.7 | |
5,030,903 | + | PS417_23225 | 0.86 | +0.3 | |
5,030,903 | + | PS417_23225 | 0.86 | +0.7 | |
5,030,903 | + | PS417_23225 | 0.86 | +1.2 | |
5,030,904 | - | PS417_23225 | 0.87 | +1.0 | |
5,030,904 | - | PS417_23225 | 0.87 | +0.6 | |
5,030,904 | - | PS417_23225 | 0.87 | -1.9 | |
5,030,929 | + | -3.0 | |||
5,030,930 | - | +0.1 | |||
5,030,930 | - | +0.5 | |||
5,031,144 | + | -2.0 | |||
5,031,145 | - | +0.0 |
Or see this region's nucleotide sequence