Experiment: Gentamicin 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_23220 and PS417_23225 are separated by 58 nucleotides PS417_23225 and PS417_23230 are separated by 123 nucleotides
PS417_23220: PS417_23220 - inositol monophosphatase, at 5,029,560 to 5,030,375
_23220
PS417_23225: PS417_23225 - hypothetical protein, at 5,030,434 to 5,030,976
_23225
PS417_23230: PS417_23230 - preprotein translocase subunit SecF, at 5,031,100 to 5,032,014
_23230
Position (kb)
5030
5031 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 5029.472 kb on - strand at 5029.486 kb on - strand at 5030.541 kb on - strand, within PS417_23225 at 5030.612 kb on + strand, within PS417_23225 at 5030.613 kb on - strand, within PS417_23225 at 5030.613 kb on - strand, within PS417_23225 at 5030.616 kb on + strand, within PS417_23225 at 5030.617 kb on - strand, within PS417_23225 at 5030.697 kb on + strand, within PS417_23225 at 5030.749 kb on + strand, within PS417_23225 at 5030.750 kb on - strand, within PS417_23225 at 5030.836 kb on + strand, within PS417_23225 at 5030.836 kb on + strand, within PS417_23225 at 5030.877 kb on - strand, within PS417_23225 at 5030.903 kb on + strand, within PS417_23225 at 5030.903 kb on + strand, within PS417_23225 at 5030.903 kb on + strand, within PS417_23225 at 5030.904 kb on - strand, within PS417_23225 at 5030.904 kb on - strand, within PS417_23225 at 5030.904 kb on - strand, within PS417_23225 at 5030.929 kb on + strand at 5030.930 kb on - strand at 5030.930 kb on - strand at 5031.144 kb on + strand at 5031.145 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Gentamicin 0.008 mg/ml remove 5,029,472 - +0.7 5,029,486 - +0.2 5,030,541 - PS417_23225 0.20 +0.7 5,030,612 + PS417_23225 0.33 -1.8 5,030,613 - PS417_23225 0.33 +0.0 5,030,613 - PS417_23225 0.33 +1.0 5,030,616 + PS417_23225 0.34 +0.7 5,030,617 - PS417_23225 0.34 -1.3 5,030,697 + PS417_23225 0.48 +0.1 5,030,749 + PS417_23225 0.58 +2.4 5,030,750 - PS417_23225 0.58 -1.0 5,030,836 + PS417_23225 0.74 +1.0 5,030,836 + PS417_23225 0.74 +1.1 5,030,877 - PS417_23225 0.82 +0.7 5,030,903 + PS417_23225 0.86 +0.3 5,030,903 + PS417_23225 0.86 +0.7 5,030,903 + PS417_23225 0.86 +1.2 5,030,904 - PS417_23225 0.87 +1.0 5,030,904 - PS417_23225 0.87 +0.6 5,030,904 - PS417_23225 0.87 -1.9 5,030,929 + -3.0 5,030,930 - +0.1 5,030,930 - +0.5 5,031,144 + -2.0 5,031,145 - +0.0
Or see this region's nucleotide sequence