Experiment: Gentamicin 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_23160 and PS417_23165 are separated by 29 nucleotides PS417_23165 and PS417_23170 are separated by 92 nucleotides PS417_23170 and PS417_23175 are separated by 14 nucleotides PS417_23175 and PS417_23180 are separated by 3 nucleotides
PS417_23160: PS417_23160 - 50S rRNA methyltransferase, at 5,020,271 to 5,021,419
_23160
PS417_23165: PS417_23165 - nucleoside diphosphate kinase, at 5,021,449 to 5,021,874
_23165
PS417_23170: PS417_23170 - FeS assembly protein IscX, at 5,021,967 to 5,022,167
_23170
PS417_23175: PS417_23175 - 2Fe-2S ferredoxin, at 5,022,182 to 5,022,523
_23175
PS417_23180: PS417_23180 - chaperone protein HscA, at 5,022,527 to 5,024,389
_23180
Position (kb) 5021
5022 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5020.615 kb on - strand, within PS417_23160 at 5020.615 kb on - strand, within PS417_23160 at 5020.657 kb on - strand, within PS417_23160 at 5021.439 kb on - strand at 5021.895 kb on - strand at 5021.923 kb on - strand at 5021.925 kb on - strand at 5022.145 kb on - strand, within PS417_23170 at 5022.145 kb on - strand, within PS417_23170 at 5022.159 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Gentamicin 0.008 mg/ml remove 5,020,615 - PS417_23160 0.30 +2.5 5,020,615 - PS417_23160 0.30 -1.3 5,020,657 - PS417_23160 0.34 +2.2 5,021,439 - -0.5 5,021,895 - -1.7 5,021,923 - +0.1 5,021,925 - -2.2 5,022,145 - PS417_23170 0.89 -1.3 5,022,145 - PS417_23170 0.89 -0.6 5,022,159 - -2.1
Or see this region's nucleotide sequence