Experiment: Gentamicin 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_23000 and PS417_23005 are separated by 71 nucleotides PS417_23005 and PS417_23015 are separated by 550 nucleotides PS417_23015 and PS417_23020 are separated by 4 nucleotides
PS417_23000: PS417_23000 - PTS N-acetyl-D-glucosamine transporter, at 4,981,506 to 4,983,212
_23000
PS417_23005: PS417_23005 - XRE family transcriptional regulator, at 4,983,284 to 4,983,571
_23005
PS417_23015: PS417_23015 - NGG1p interacting factor 3 protein, NIF3, at 4,984,122 to 4,984,433
_23015
PS417_23020: PS417_23020 - phosphoribosylformylglycinamidine synthase, at 4,984,438 to 4,988,334
_23020
Position (kb)
4984
4985 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4983.325 kb on + strand, within PS417_23005 at 4983.325 kb on + strand, within PS417_23005 at 4983.326 kb on - strand, within PS417_23005 at 4983.348 kb on + strand, within PS417_23005 at 4983.520 kb on + strand, within PS417_23005 at 4983.536 kb on + strand, within PS417_23005 at 4983.629 kb on + strand at 4983.629 kb on + strand at 4983.629 kb on + strand at 4983.629 kb on + strand at 4983.630 kb on - strand at 4983.630 kb on - strand at 4983.630 kb on - strand at 4983.654 kb on + strand at 4983.754 kb on + strand at 4983.825 kb on - strand at 4983.842 kb on + strand at 4983.843 kb on - strand at 4983.907 kb on + strand at 4983.931 kb on + strand at 4983.932 kb on - strand at 4983.932 kb on - strand at 4984.110 kb on - strand at 4984.150 kb on + strand at 4984.166 kb on - strand, within PS417_23015 at 4984.166 kb on - strand, within PS417_23015 at 4984.342 kb on + strand, within PS417_23015 at 4984.343 kb on - strand, within PS417_23015 at 4984.429 kb on + strand at 4984.430 kb on - strand at 4984.439 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Gentamicin 0.008 mg/ml remove 4,983,325 + PS417_23005 0.14 -0.6 4,983,325 + PS417_23005 0.14 -0.9 4,983,326 - PS417_23005 0.15 +0.1 4,983,348 + PS417_23005 0.22 +0.1 4,983,520 + PS417_23005 0.82 -0.7 4,983,536 + PS417_23005 0.88 -1.1 4,983,629 + +0.1 4,983,629 + -1.4 4,983,629 + -1.8 4,983,629 + -0.1 4,983,630 - +0.8 4,983,630 - -2.0 4,983,630 - -2.0 4,983,654 + +0.8 4,983,754 + -1.3 4,983,825 - -0.1 4,983,842 + +0.1 4,983,843 - -0.6 4,983,907 + +0.6 4,983,931 + -1.9 4,983,932 - -0.5 4,983,932 - +0.6 4,984,110 - -2.2 4,984,150 + -2.0 4,984,166 - PS417_23015 0.14 +0.3 4,984,166 - PS417_23015 0.14 -0.7 4,984,342 + PS417_23015 0.71 +2.6 4,984,343 - PS417_23015 0.71 +1.4 4,984,429 + -0.1 4,984,430 - +2.5 4,984,439 + +0.0
Or see this region's nucleotide sequence