Experiment: Gentamicin 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_22610 and PS417_22615 are separated by 225 nucleotides PS417_22615 and PS417_22620 are separated by 173 nucleotides PS417_22620 and PS417_22625 are separated by 56 nucleotides PS417_22625 and PS417_22630 are separated by 30 nucleotides
PS417_22610: PS417_22610 - pilus assembly protein PilZ, at 4,896,265 to 4,896,624
_22610
PS417_22615: PS417_22615 - hypothetical protein, at 4,896,850 to 4,897,224
_22615
PS417_22620: PS417_22620 - pyruvate kinase, at 4,897,398 to 4,898,849
_22620
PS417_22625: PS417_22625 - enoyl-CoA hydratase, at 4,898,906 to 4,899,655
_22625
PS417_22630: PS417_22630 - hypothetical protein, at 4,899,686 to 4,900,618
_22630
Position (kb) 4897
4898
4899 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 4896.568 kb on - strand, within PS417_22610 at 4896.832 kb on - strand at 4896.832 kb on - strand at 4896.834 kb on + strand at 4896.835 kb on - strand at 4896.835 kb on - strand at 4896.944 kb on + strand, within PS417_22615 at 4897.058 kb on + strand, within PS417_22615 at 4897.059 kb on - strand, within PS417_22615 at 4897.059 kb on - strand, within PS417_22615 at 4897.059 kb on - strand, within PS417_22615 at 4897.130 kb on + strand, within PS417_22615 at 4897.131 kb on - strand, within PS417_22615 at 4897.324 kb on + strand at 4897.344 kb on + strand at 4897.359 kb on + strand at 4897.359 kb on + strand at 4897.362 kb on + strand at 4897.362 kb on + strand at 4897.363 kb on - strand at 4897.966 kb on - strand, within PS417_22620 at 4898.007 kb on + strand, within PS417_22620 at 4898.502 kb on + strand at 4898.502 kb on + strand, within PS417_22620 at 4898.503 kb on - strand, within PS417_22620 at 4898.661 kb on + strand, within PS417_22620 at 4898.662 kb on - strand, within PS417_22620 at 4898.787 kb on + strand at 4898.972 kb on + strand at 4898.973 kb on - strand at 4899.028 kb on + strand, within PS417_22625 at 4899.029 kb on - strand, within PS417_22625 at 4899.303 kb on + strand, within PS417_22625 at 4899.303 kb on + strand, within PS417_22625 at 4899.303 kb on + strand, within PS417_22625 at 4899.304 kb on - strand, within PS417_22625 at 4899.304 kb on - strand, within PS417_22625 at 4899.334 kb on + strand, within PS417_22625 at 4899.334 kb on + strand, within PS417_22625 at 4899.334 kb on + strand, within PS417_22625 at 4899.335 kb on - strand, within PS417_22625 at 4899.409 kb on - strand, within PS417_22625 at 4899.561 kb on + strand, within PS417_22625 at 4899.561 kb on + strand, within PS417_22625 at 4899.561 kb on + strand, within PS417_22625 at 4899.562 kb on - strand, within PS417_22625 at 4899.562 kb on - strand, within PS417_22625 at 4899.562 kb on - strand, within PS417_22625 at 4899.562 kb on - strand, within PS417_22625 at 4899.792 kb on - strand, within PS417_22630 at 4899.792 kb on - strand, within PS417_22630
Per-strain Table
Position Strand Gene LocusTag Fraction Gentamicin 0.008 mg/ml remove 4,896,568 - PS417_22610 0.84 -2.8 4,896,832 - -2.0 4,896,832 - -1.6 4,896,834 + +1.9 4,896,835 - -0.3 4,896,835 - -0.5 4,896,944 + PS417_22615 0.25 -0.6 4,897,058 + PS417_22615 0.55 -0.6 4,897,059 - PS417_22615 0.56 -1.9 4,897,059 - PS417_22615 0.56 -1.4 4,897,059 - PS417_22615 0.56 -0.6 4,897,130 + PS417_22615 0.75 -3.3 4,897,131 - PS417_22615 0.75 -1.3 4,897,324 + -0.6 4,897,344 + -3.5 4,897,359 + -2.5 4,897,359 + -2.1 4,897,362 + -1.4 4,897,362 + +0.4 4,897,363 - -3.0 4,897,966 - PS417_22620 0.39 -4.5 4,898,007 + PS417_22620 0.42 +0.1 4,898,502 + +0.9 4,898,502 + PS417_22620 0.76 -2.0 4,898,503 - PS417_22620 0.76 -1.8 4,898,661 + PS417_22620 0.87 -0.9 4,898,662 - PS417_22620 0.87 -3.0 4,898,787 + -1.9 4,898,972 + +0.9 4,898,973 - -0.7 4,899,028 + PS417_22625 0.16 -0.9 4,899,029 - PS417_22625 0.16 +0.7 4,899,303 + PS417_22625 0.53 -0.3 4,899,303 + PS417_22625 0.53 +0.5 4,899,303 + PS417_22625 0.53 +0.1 4,899,304 - PS417_22625 0.53 +2.3 4,899,304 - PS417_22625 0.53 -1.4 4,899,334 + PS417_22625 0.57 +0.2 4,899,334 + PS417_22625 0.57 -2.0 4,899,334 + PS417_22625 0.57 -0.3 4,899,335 - PS417_22625 0.57 -1.4 4,899,409 - PS417_22625 0.67 +2.3 4,899,561 + PS417_22625 0.87 -0.5 4,899,561 + PS417_22625 0.87 +2.7 4,899,561 + PS417_22625 0.87 -2.1 4,899,562 - PS417_22625 0.87 -3.4 4,899,562 - PS417_22625 0.87 -0.2 4,899,562 - PS417_22625 0.87 -0.9 4,899,562 - PS417_22625 0.87 -0.8 4,899,792 - PS417_22630 0.11 +0.7 4,899,792 - PS417_22630 0.11 +2.2
Or see this region's nucleotide sequence