Experiment: Gentamicin 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_22350 and PS417_22355 are separated by 405 nucleotides PS417_22355 and PS417_22360 are separated by 10 nucleotides
PS417_22350: PS417_22350 - Fis family transcriptional regulator, at 4,841,222 to 4,842,730
_22350
PS417_22355: PS417_22355 - glycine cleavage system protein H, at 4,843,136 to 4,843,519
_22355
PS417_22360: PS417_22360 - Glycine dehydrogenase (aminomethyl-transferring) (EC 1.4.4.2) (from data) , at 4,843,530 to 4,846,370
_22360
Position (kb)
4843
4844 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4842.292 kb on - strand, within PS417_22350 at 4842.626 kb on + strand at 4842.626 kb on + strand at 4842.881 kb on - strand at 4843.015 kb on + strand at 4843.311 kb on + strand, within PS417_22355 at 4843.312 kb on - strand, within PS417_22355 at 4843.331 kb on + strand, within PS417_22355 at 4843.332 kb on - strand, within PS417_22355 at 4843.332 kb on - strand, within PS417_22355 at 4843.436 kb on - strand, within PS417_22355 at 4843.485 kb on - strand at 4843.770 kb on + strand at 4843.770 kb on + strand at 4843.771 kb on - strand at 4843.771 kb on - strand at 4843.771 kb on - strand at 4843.789 kb on - strand at 4843.855 kb on - strand, within PS417_22360 at 4843.855 kb on - strand, within PS417_22360 at 4843.855 kb on - strand, within PS417_22360 at 4843.855 kb on - strand, within PS417_22360 at 4844.492 kb on + strand, within PS417_22360 at 4844.493 kb on - strand, within PS417_22360
Per-strain Table
Position Strand Gene LocusTag Fraction Gentamicin 0.008 mg/ml remove 4,842,292 - PS417_22350 0.71 +0.5 4,842,626 + +0.1 4,842,626 + -0.7 4,842,881 - +2.1 4,843,015 + +0.5 4,843,311 + PS417_22355 0.46 +0.7 4,843,312 - PS417_22355 0.46 +1.7 4,843,331 + PS417_22355 0.51 -1.1 4,843,332 - PS417_22355 0.51 -0.7 4,843,332 - PS417_22355 0.51 -1.5 4,843,436 - PS417_22355 0.78 -0.2 4,843,485 - -0.8 4,843,770 + +1.5 4,843,770 + -1.3 4,843,771 - -0.3 4,843,771 - +1.3 4,843,771 - -2.5 4,843,789 - -0.2 4,843,855 - PS417_22360 0.11 -0.5 4,843,855 - PS417_22360 0.11 +0.9 4,843,855 - PS417_22360 0.11 +0.4 4,843,855 - PS417_22360 0.11 -1.3 4,844,492 + PS417_22360 0.34 -1.1 4,844,493 - PS417_22360 0.34 -0.5
Or see this region's nucleotide sequence