Experiment: Gentamicin 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_22075 and PS417_22080 are separated by 57 nucleotides PS417_22080 and PS417_22085 are separated by 55 nucleotides PS417_22085 and PS417_22090 are separated by 205 nucleotides PS417_22090 and PS417_22095 are separated by 12 nucleotides
PS417_22075: PS417_22075 - alpha/beta hydrolase, at 4,784,306 to 4,785,250
_22075
PS417_22080: PS417_22080 - 3-hydroxybutyryl-CoA dehydratase, at 4,785,308 to 4,785,778
_22080
PS417_22085: PS417_22085 - aldehyde dehydrogenase, at 4,785,834 to 4,786,301
_22085
PS417_22090: PS417_22090 - hypothetical protein, at 4,786,507 to 4,786,743
_22090
PS417_22095: PS417_22095 - class V aminotransferase, at 4,786,756 to 4,787,931
_22095
Position (kb) 4785
4786 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4784.355 kb on - strand at 4784.355 kb on - strand at 4784.471 kb on + strand, within PS417_22075 at 4784.478 kb on + strand, within PS417_22075 at 4784.478 kb on + strand, within PS417_22075 at 4784.478 kb on + strand, within PS417_22075 at 4784.478 kb on + strand, within PS417_22075 at 4784.479 kb on - strand, within PS417_22075 at 4784.479 kb on - strand, within PS417_22075 at 4784.479 kb on - strand, within PS417_22075 at 4784.480 kb on + strand, within PS417_22075 at 4784.481 kb on - strand, within PS417_22075 at 4784.654 kb on + strand, within PS417_22075 at 4784.654 kb on + strand, within PS417_22075 at 4784.654 kb on + strand, within PS417_22075 at 4784.655 kb on - strand, within PS417_22075 at 4784.655 kb on - strand, within PS417_22075 at 4784.655 kb on - strand, within PS417_22075 at 4784.655 kb on - strand, within PS417_22075 at 4784.670 kb on - strand, within PS417_22075 at 4784.906 kb on + strand, within PS417_22075 at 4784.906 kb on + strand, within PS417_22075 at 4784.907 kb on - strand, within PS417_22075 at 4785.195 kb on + strand at 4785.196 kb on - strand at 4785.857 kb on + strand at 4785.892 kb on - strand, within PS417_22085 at 4785.901 kb on + strand, within PS417_22085 at 4785.901 kb on + strand, within PS417_22085 at 4786.424 kb on - strand at 4786.562 kb on - strand, within PS417_22090 at 4786.562 kb on - strand, within PS417_22090 at 4786.755 kb on + strand at 4786.755 kb on + strand at 4786.756 kb on - strand at 4786.756 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Gentamicin 0.008 mg/ml remove 4,784,355 - -1.4 4,784,355 - -1.2 4,784,471 + PS417_22075 0.17 -0.1 4,784,478 + PS417_22075 0.18 -0.2 4,784,478 + PS417_22075 0.18 -1.5 4,784,478 + PS417_22075 0.18 +0.4 4,784,478 + PS417_22075 0.18 -0.9 4,784,479 - PS417_22075 0.18 +0.1 4,784,479 - PS417_22075 0.18 +2.4 4,784,479 - PS417_22075 0.18 +0.1 4,784,480 + PS417_22075 0.18 -0.2 4,784,481 - PS417_22075 0.19 +0.3 4,784,654 + PS417_22075 0.37 +0.1 4,784,654 + PS417_22075 0.37 -0.6 4,784,654 + PS417_22075 0.37 -1.6 4,784,655 - PS417_22075 0.37 +1.2 4,784,655 - PS417_22075 0.37 -1.6 4,784,655 - PS417_22075 0.37 +1.2 4,784,655 - PS417_22075 0.37 +0.0 4,784,670 - PS417_22075 0.39 +2.4 4,784,906 + PS417_22075 0.63 -0.4 4,784,906 + PS417_22075 0.63 -0.4 4,784,907 - PS417_22075 0.64 -2.6 4,785,195 + +1.1 4,785,196 - +1.5 4,785,857 + +0.3 4,785,892 - PS417_22085 0.12 -2.2 4,785,901 + PS417_22085 0.14 -0.6 4,785,901 + PS417_22085 0.14 +0.8 4,786,424 - -0.3 4,786,562 - PS417_22090 0.23 -2.6 4,786,562 - PS417_22090 0.23 -0.6 4,786,755 + +0.4 4,786,755 + +1.4 4,786,756 - +0.7 4,786,756 - -1.1
Or see this region's nucleotide sequence