Strain Fitness in Pseudomonas simiae WCS417 around PS417_02190
Experiment: Gentamicin 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
| Position | Strand | Gene | LocusTag | Fraction | Gentamicin 0.008 mg/ml |
|---|---|---|---|---|---|
| remove | |||||
| 494,483 | + | PS417_02185 | 0.67 | -0.8 | |
| 494,599 | - | PS417_02185 | 0.73 | +2.8 | |
| 494,773 | + | PS417_02185 | 0.82 | -0.2 | |
| 494,773 | + | PS417_02185 | 0.82 | -0.5 | |
| 494,839 | + | PS417_02185 | 0.85 | +0.5 | |
| 495,307 | - | PS417_02190 | 0.23 | -0.2 | |
| 495,529 | + | PS417_02190 | 0.56 | +4.0 | |
| 495,529 | + | PS417_02190 | 0.56 | -1.4 | |
| 495,529 | + | PS417_02190 | 0.56 | +0.2 | |
| 495,529 | + | PS417_02190 | 0.56 | +0.3 | |
| 495,530 | - | PS417_02190 | 0.56 | -0.4 | |
| 495,625 | + | PS417_02190 | 0.70 | -2.2 | |
| 495,637 | + | PS417_02190 | 0.72 | -1.5 | |
| 495,720 | + | PS417_02190 | 0.84 | -1.6 | |
| 495,720 | + | PS417_02190 | 0.84 | -0.8 | |
| 495,763 | - | -0.5 | |||
| 495,937 | - | +1.6 | |||
| 496,810 | + | +0.8 | |||
| 496,811 | - | +1.7 |
Or see this region's nucleotide sequence