Experiment: Gentamicin 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_21920 and PS417_21925 are separated by 106 nucleotides PS417_21925 and PS417_21930 are separated by 81 nucleotides PS417_21930 and PS417_21935 are separated by 88 nucleotides PS417_21935 and PS417_21940 are separated by 11 nucleotides
PS417_21920: PS417_21920 - transcriptional regulator, at 4,757,021 to 4,757,917
_21920
PS417_21925: PS417_21925 - short-chain dehydrogenase, at 4,758,024 to 4,758,782
_21925
PS417_21930: PS417_21930 - membrane protein, at 4,758,864 to 4,759,328
_21930
PS417_21935: PS417_21935 - transcriptional regulator, at 4,759,417 to 4,760,271
_21935
PS417_21940: PS417_21940 - hypothetical protein, at 4,760,283 to 4,760,528
_21940
Position (kb)
4758
4759
4760 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 4757.982 kb on + strand at 4758.044 kb on + strand at 4758.044 kb on + strand at 4758.045 kb on - strand at 4758.124 kb on - strand, within PS417_21925 at 4758.268 kb on + strand, within PS417_21925 at 4758.268 kb on + strand, within PS417_21925 at 4758.269 kb on - strand, within PS417_21925 at 4758.446 kb on + strand, within PS417_21925 at 4758.447 kb on - strand, within PS417_21925 at 4758.447 kb on - strand, within PS417_21925 at 4758.493 kb on - strand, within PS417_21925 at 4758.894 kb on - strand at 4758.940 kb on + strand, within PS417_21930 at 4758.952 kb on + strand, within PS417_21930 at 4758.953 kb on - strand, within PS417_21930 at 4758.953 kb on - strand, within PS417_21930 at 4758.953 kb on - strand, within PS417_21930 at 4758.958 kb on + strand, within PS417_21930 at 4758.958 kb on + strand, within PS417_21930 at 4758.958 kb on + strand, within PS417_21930 at 4758.958 kb on + strand, within PS417_21930 at 4758.958 kb on + strand, within PS417_21930 at 4758.958 kb on + strand, within PS417_21930 at 4758.958 kb on + strand, within PS417_21930 at 4758.958 kb on + strand, within PS417_21930 at 4758.958 kb on + strand, within PS417_21930 at 4758.958 kb on + strand, within PS417_21930 at 4758.959 kb on - strand, within PS417_21930 at 4758.959 kb on - strand, within PS417_21930 at 4758.959 kb on - strand, within PS417_21930 at 4758.959 kb on - strand, within PS417_21930 at 4758.959 kb on - strand, within PS417_21930 at 4758.959 kb on - strand, within PS417_21930 at 4758.964 kb on + strand, within PS417_21930 at 4759.001 kb on + strand, within PS417_21930 at 4759.391 kb on - strand at 4759.554 kb on - strand, within PS417_21935 at 4759.721 kb on - strand, within PS417_21935 at 4759.721 kb on - strand, within PS417_21935 at 4759.959 kb on - strand, within PS417_21935 at 4760.117 kb on + strand, within PS417_21935 at 4760.323 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Gentamicin 0.008 mg/ml remove 4,757,982 + -1.2 4,758,044 + -0.8 4,758,044 + +2.3 4,758,045 - +1.3 4,758,124 - PS417_21925 0.13 -1.3 4,758,268 + PS417_21925 0.32 -1.4 4,758,268 + PS417_21925 0.32 +0.1 4,758,269 - PS417_21925 0.32 +0.3 4,758,446 + PS417_21925 0.56 -0.1 4,758,447 - PS417_21925 0.56 -0.0 4,758,447 - PS417_21925 0.56 +1.1 4,758,493 - PS417_21925 0.62 +0.6 4,758,894 - +2.2 4,758,940 + PS417_21930 0.16 +1.8 4,758,952 + PS417_21930 0.19 -0.2 4,758,953 - PS417_21930 0.19 +1.0 4,758,953 - PS417_21930 0.19 +0.6 4,758,953 - PS417_21930 0.19 +0.8 4,758,958 + PS417_21930 0.20 +0.1 4,758,958 + PS417_21930 0.20 -0.6 4,758,958 + PS417_21930 0.20 -1.2 4,758,958 + PS417_21930 0.20 -1.3 4,758,958 + PS417_21930 0.20 +0.4 4,758,958 + PS417_21930 0.20 +0.3 4,758,958 + PS417_21930 0.20 +3.2 4,758,958 + PS417_21930 0.20 +0.3 4,758,958 + PS417_21930 0.20 -1.6 4,758,958 + PS417_21930 0.20 +0.8 4,758,959 - PS417_21930 0.20 +0.1 4,758,959 - PS417_21930 0.20 -0.0 4,758,959 - PS417_21930 0.20 -0.6 4,758,959 - PS417_21930 0.20 -4.1 4,758,959 - PS417_21930 0.20 -0.4 4,758,959 - PS417_21930 0.20 +1.2 4,758,964 + PS417_21930 0.22 +1.0 4,759,001 + PS417_21930 0.29 -0.9 4,759,391 - -0.2 4,759,554 - PS417_21935 0.16 +1.9 4,759,721 - PS417_21935 0.36 -0.7 4,759,721 - PS417_21935 0.36 +0.5 4,759,959 - PS417_21935 0.63 -0.5 4,760,117 + PS417_21935 0.82 +1.1 4,760,323 + -1.2
Or see this region's nucleotide sequence