Strain Fitness in Pseudomonas simiae WCS417 around PS417_02140

Experiment: Gentamicin 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_02130 and PS417_02140 are separated by 644 nucleotidesPS417_02140 and PS417_02145 are separated by 48 nucleotides PS417_02130: PS417_02130 - hypothetical protein, at 474,846 to 475,064 _02130 PS417_02140: PS417_02140 - hypothetical protein, at 475,709 to 477,172 _02140 PS417_02145: PS417_02145 - potassium transporter KefA, at 477,221 to 480,559 _02145 Position (kb) 475 476 477 478Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 474.710 kb on + strandat 474.710 kb on + strandat 474.710 kb on + strandat 474.711 kb on - strandat 474.711 kb on - strandat 474.712 kb on + strandat 474.712 kb on + strandat 474.712 kb on + strandat 474.712 kb on + strandat 474.713 kb on - strandat 474.713 kb on - strandat 474.775 kb on - strandat 474.793 kb on - strandat 474.806 kb on + strandat 474.852 kb on - strandat 474.852 kb on - strandat 475.057 kb on + strandat 475.058 kb on - strandat 475.111 kb on + strandat 475.438 kb on + strandat 475.580 kb on + strandat 475.580 kb on + strandat 475.581 kb on - strandat 475.610 kb on + strandat 475.611 kb on - strandat 475.625 kb on - strandat 475.625 kb on - strandat 475.654 kb on + strandat 475.654 kb on + strandat 475.655 kb on - strandat 475.655 kb on - strandat 475.663 kb on - strandat 475.834 kb on - strandat 475.875 kb on + strand, within PS417_02140at 475.890 kb on + strand, within PS417_02140at 475.890 kb on + strand, within PS417_02140at 475.890 kb on + strand, within PS417_02140at 475.891 kb on - strand, within PS417_02140at 475.936 kb on + strand, within PS417_02140at 475.937 kb on - strand, within PS417_02140at 475.937 kb on - strand, within PS417_02140at 475.938 kb on + strand, within PS417_02140at 475.969 kb on - strand, within PS417_02140at 475.969 kb on - strand, within PS417_02140at 476.077 kb on - strand, within PS417_02140at 476.181 kb on + strand, within PS417_02140at 476.206 kb on - strand, within PS417_02140at 476.449 kb on - strand, within PS417_02140at 476.556 kb on - strand, within PS417_02140at 476.598 kb on + strand, within PS417_02140at 476.598 kb on + strand, within PS417_02140at 476.601 kb on + strand, within PS417_02140at 476.602 kb on - strand, within PS417_02140at 476.602 kb on - strand, within PS417_02140at 476.607 kb on + strand, within PS417_02140at 476.607 kb on + strand, within PS417_02140at 476.843 kb on + strand, within PS417_02140at 476.944 kb on - strand, within PS417_02140at 477.214 kb on - strandat 477.304 kb on - strandat 477.331 kb on - strandat 477.389 kb on - strandat 477.489 kb on + strandat 477.489 kb on + strandat 477.490 kb on - strandat 477.490 kb on - strandat 477.490 kb on - strandat 477.490 kb on - strandat 477.939 kb on + strand, within PS417_02145at 477.939 kb on + strand, within PS417_02145at 477.939 kb on + strand, within PS417_02145at 477.940 kb on - strand, within PS417_02145at 477.940 kb on - strand, within PS417_02145at 477.940 kb on - strand, within PS417_02145at 477.964 kb on - strand, within PS417_02145at 478.106 kb on - strand, within PS417_02145at 478.128 kb on + strand, within PS417_02145at 478.128 kb on + strand, within PS417_02145at 478.128 kb on + strand, within PS417_02145at 478.129 kb on - strand, within PS417_02145

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Per-strain Table

Position Strand Gene LocusTag Fraction Gentamicin 0.008 mg/ml
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474,710 + +0.2
474,710 + -2.0
474,710 + +1.1
474,711 - -2.1
474,711 - +0.5
474,712 + +0.8
474,712 + +1.2
474,712 + -1.0
474,712 + +0.4
474,713 - -0.3
474,713 - +0.3
474,775 - -0.1
474,793 - +0.1
474,806 + -0.8
474,852 - +0.8
474,852 - -0.1
475,057 + -0.8
475,058 - -0.4
475,111 + -1.1
475,438 + -1.0
475,580 + +0.6
475,580 + +1.0
475,581 - +0.4
475,610 + -0.1
475,611 - +0.2
475,625 - +0.4
475,625 - +1.7
475,654 + +0.9
475,654 + +0.8
475,655 - +0.7
475,655 - -0.5
475,663 - +0.1
475,834 - +0.6
475,875 + PS417_02140 0.11 +0.5
475,890 + PS417_02140 0.12 -0.2
475,890 + PS417_02140 0.12 -1.8
475,890 + PS417_02140 0.12 -1.1
475,891 - PS417_02140 0.12 -1.3
475,936 + PS417_02140 0.16 +0.6
475,937 - PS417_02140 0.16 +1.0
475,937 - PS417_02140 0.16 -0.9
475,938 + PS417_02140 0.16 -0.3
475,969 - PS417_02140 0.18 -0.3
475,969 - PS417_02140 0.18 -1.4
476,077 - PS417_02140 0.25 -0.5
476,181 + PS417_02140 0.32 -0.4
476,206 - PS417_02140 0.34 -0.7
476,449 - PS417_02140 0.51 -2.2
476,556 - PS417_02140 0.58 -3.0
476,598 + PS417_02140 0.61 +0.4
476,598 + PS417_02140 0.61 +0.2
476,601 + PS417_02140 0.61 +0.5
476,602 - PS417_02140 0.61 -1.3
476,602 - PS417_02140 0.61 +0.7
476,607 + PS417_02140 0.61 -0.6
476,607 + PS417_02140 0.61 -1.4
476,843 + PS417_02140 0.77 -0.2
476,944 - PS417_02140 0.84 -2.4
477,214 - +0.2
477,304 - -0.1
477,331 - +0.0
477,389 - -0.8
477,489 + -0.1
477,489 + -1.5
477,490 - +2.0
477,490 - -0.5
477,490 - +0.0
477,490 - -0.3
477,939 + PS417_02145 0.22 -1.3
477,939 + PS417_02145 0.22 +0.6
477,939 + PS417_02145 0.22 -1.1
477,940 - PS417_02145 0.22 +0.2
477,940 - PS417_02145 0.22 +0.2
477,940 - PS417_02145 0.22 +0.8
477,964 - PS417_02145 0.22 -2.3
478,106 - PS417_02145 0.27 -0.2
478,128 + PS417_02145 0.27 +0.4
478,128 + PS417_02145 0.27 +0.8
478,128 + PS417_02145 0.27 -2.5
478,129 - PS417_02145 0.27 -0.1

Or see this region's nucleotide sequence