Experiment: Gentamicin 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_21480 and PS417_21485 are separated by 768 nucleotides PS417_21485 and PS417_21490 are separated by 171 nucleotides PS417_21490 and PS417_21495 overlap by 4 nucleotides
PS417_21480: PS417_21480 - 23S rRNA pseudouridylate synthase, at 4,661,404 to 4,662,363
_21480
PS417_21485: PS417_21485 - ribonuclease E, at 4,663,132 to 4,666,278
_21485
PS417_21490: PS417_21490 - molybdopterin-guanine dinucleotide biosynthesis protein MobA, at 4,666,450 to 4,667,040
_21490
PS417_21495: PS417_21495 - lipoprotein, at 4,667,037 to 4,668,023
_21495
Position (kb) 4663
4664
4665
4666
4667 Strain fitness (log2 ratio) -1
0
1
2 at 4662.376 kb on - strand at 4662.726 kb on + strand at 4662.726 kb on + strand at 4662.772 kb on + strand at 4666.329 kb on + strand at 4666.346 kb on + strand at 4666.513 kb on + strand, within PS417_21490 at 4666.513 kb on + strand, within PS417_21490 at 4666.513 kb on + strand, within PS417_21490 at 4666.514 kb on - strand, within PS417_21490 at 4666.514 kb on - strand, within PS417_21490 at 4666.606 kb on - strand, within PS417_21490 at 4666.626 kb on - strand, within PS417_21490 at 4666.773 kb on + strand, within PS417_21490 at 4666.773 kb on + strand, within PS417_21490 at 4666.774 kb on - strand, within PS417_21490 at 4666.945 kb on + strand, within PS417_21490 at 4666.946 kb on - strand, within PS417_21490 at 4667.263 kb on + strand, within PS417_21495
Per-strain Table
Position Strand Gene LocusTag Fraction Gentamicin 0.008 mg/ml remove 4,662,376 - +0.3 4,662,726 + +1.8 4,662,726 + +1.6 4,662,772 + +2.0 4,666,329 + +0.1 4,666,346 + +0.0 4,666,513 + PS417_21490 0.11 +0.3 4,666,513 + PS417_21490 0.11 +0.8 4,666,513 + PS417_21490 0.11 -0.2 4,666,514 - PS417_21490 0.11 -0.6 4,666,514 - PS417_21490 0.11 +0.5 4,666,606 - PS417_21490 0.26 +0.1 4,666,626 - PS417_21490 0.30 -0.2 4,666,773 + PS417_21490 0.55 +0.8 4,666,773 + PS417_21490 0.55 -0.1 4,666,774 - PS417_21490 0.55 -0.0 4,666,945 + PS417_21490 0.84 +0.2 4,666,946 - PS417_21490 0.84 +0.6 4,667,263 + PS417_21495 0.23 +2.0
Or see this region's nucleotide sequence