Experiment: Gentamicin 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_02110 and PS417_02115 overlap by 23 nucleotides PS417_02115 and PS417_02120 overlap by 25 nucleotides PS417_02120 and PS417_02125 are separated by 304 nucleotides
PS417_02110: PS417_02110 - acyl carrier protein, at 471,532 to 471,801
_02110
PS417_02115: PS417_02115 - acyltransferase, at 471,779 to 472,591
_02115
PS417_02120: PS417_02120 - 3-oxoacyl-ACP synthase, at 472,567 to 473,286
_02120
PS417_02125: PS417_02125 - cobalamin biosynthesis protein CobQ, at 473,591 to 474,361
_02125
Position (kb) 472
473
474 Strain fitness (log2 ratio) -2
-1
0
1
2 at 471.769 kb on + strand, within PS417_02110 at 471.825 kb on + strand at 471.899 kb on + strand, within PS417_02115 at 471.899 kb on + strand, within PS417_02115 at 471.899 kb on + strand, within PS417_02115 at 471.900 kb on - strand, within PS417_02115 at 471.900 kb on - strand, within PS417_02115 at 471.901 kb on + strand, within PS417_02115 at 472.172 kb on - strand, within PS417_02115 at 472.174 kb on - strand, within PS417_02115 at 472.409 kb on - strand, within PS417_02115 at 472.409 kb on - strand, within PS417_02115 at 472.546 kb on - strand at 472.546 kb on - strand at 473.296 kb on - strand at 473.397 kb on - strand at 473.403 kb on + strand at 473.403 kb on + strand at 473.448 kb on + strand at 473.449 kb on - strand at 473.554 kb on + strand at 473.575 kb on - strand at 473.575 kb on - strand at 473.726 kb on + strand at 473.726 kb on + strand, within PS417_02125 at 473.752 kb on + strand, within PS417_02125 at 473.755 kb on - strand, within PS417_02125 at 473.824 kb on - strand, within PS417_02125 at 473.824 kb on - strand, within PS417_02125 at 473.827 kb on + strand, within PS417_02125 at 473.828 kb on - strand, within PS417_02125 at 473.828 kb on - strand, within PS417_02125 at 473.828 kb on - strand, within PS417_02125 at 473.831 kb on + strand, within PS417_02125 at 473.832 kb on - strand, within PS417_02125 at 474.132 kb on + strand, within PS417_02125 at 474.132 kb on + strand, within PS417_02125 at 474.237 kb on - strand, within PS417_02125 at 474.237 kb on - strand, within PS417_02125 at 474.237 kb on - strand, within PS417_02125
Per-strain Table
Position Strand Gene LocusTag Fraction Gentamicin 0.008 mg/ml remove 471,769 + PS417_02110 0.88 -0.3 471,825 + -2.3 471,899 + PS417_02115 0.15 -1.6 471,899 + PS417_02115 0.15 +2.4 471,899 + PS417_02115 0.15 -0.4 471,900 - PS417_02115 0.15 -0.7 471,900 - PS417_02115 0.15 -1.8 471,901 + PS417_02115 0.15 +0.5 472,172 - PS417_02115 0.48 -0.9 472,174 - PS417_02115 0.49 -2.1 472,409 - PS417_02115 0.77 +1.0 472,409 - PS417_02115 0.77 +1.6 472,546 - -1.1 472,546 - +1.3 473,296 - -1.2 473,397 - -2.0 473,403 + -1.7 473,403 + -1.3 473,448 + -1.3 473,449 - -0.4 473,554 + -0.3 473,575 - -2.1 473,575 - +0.5 473,726 + -0.1 473,726 + PS417_02125 0.18 -0.9 473,752 + PS417_02125 0.21 -1.4 473,755 - PS417_02125 0.21 -1.4 473,824 - PS417_02125 0.30 -2.1 473,824 - PS417_02125 0.30 -1.8 473,827 + PS417_02125 0.31 -1.7 473,828 - PS417_02125 0.31 +0.3 473,828 - PS417_02125 0.31 -0.8 473,828 - PS417_02125 0.31 -0.7 473,831 + PS417_02125 0.31 -1.0 473,832 - PS417_02125 0.31 -0.8 474,132 + PS417_02125 0.70 +0.1 474,132 + PS417_02125 0.70 +0.1 474,237 - PS417_02125 0.84 -1.5 474,237 - PS417_02125 0.84 +0.0 474,237 - PS417_02125 0.84 -0.4
Or see this region's nucleotide sequence