Experiment: Gentamicin 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_20620 and PS417_20625 overlap by 4 nucleotides PS417_20625 and PS417_20630 are separated by 16 nucleotides PS417_20630 and PS417_20635 are separated by 35 nucleotides PS417_20635 and PS417_20640 overlap by 11 nucleotides
PS417_20620: PS417_20620 - glycosyl transferase family 2, at 4,481,872 to 4,482,870
_20620
PS417_20625: PS417_20625 - hypothetical protein, at 4,482,867 to 4,483,205
_20625
PS417_20630: PS417_20630 - adenylylsulfate kinase, at 4,483,222 to 4,483,815
_20630
PS417_20635: PS417_20635 - ABC transporter ATP-binding protein, at 4,483,851 to 4,485,215
_20635
PS417_20640: PS417_20640 - sugar ABC transporter permease, at 4,485,205 to 4,486,044
_20640
Position (kb)
4483
4484
4485
4486 Strain fitness (log2 ratio)
-1
0
1
2
3
4
5 at 4485.078 kb on - strand, within PS417_20635 at 4485.972 kb on + strand at 4486.001 kb on - strand at 4486.050 kb on - strand at 4486.085 kb on - strand at 4486.085 kb on - strand at 4486.085 kb on - strand at 4486.085 kb on - strand at 4486.085 kb on - strand at 4486.085 kb on - strand at 4486.085 kb on - strand at 4486.089 kb on - strand at 4486.089 kb on - strand at 4486.121 kb on - strand at 4486.166 kb on + strand at 4486.168 kb on + strand at 4486.169 kb on - strand at 4486.169 kb on - strand at 4486.169 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Gentamicin 0.008 mg/ml remove 4,485,078 - PS417_20635 0.90 +4.4 4,485,972 + +4.5 4,486,001 - +4.6 4,486,050 - +4.5 4,486,085 - +3.7 4,486,085 - +3.3 4,486,085 - +3.4 4,486,085 - +3.4 4,486,085 - +4.2 4,486,085 - +3.0 4,486,085 - +3.2 4,486,089 - +3.0 4,486,089 - +2.8 4,486,121 - -0.3 4,486,166 + +4.8 4,486,168 + +5.2 4,486,169 - +1.3 4,486,169 - -0.0 4,486,169 - -0.9
Or see this region's nucleotide sequence