Strain Fitness in Pseudomonas simiae WCS417 around PS417_19530

Experiment: Gentamicin 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_19525 and PS417_19530 are separated by 0 nucleotidesPS417_19530 and PS417_19535 overlap by 25 nucleotidesPS417_19535 and PS417_19540 are separated by 71 nucleotides PS417_19525: PS417_19525 - thiol:disulfide interchange protein, at 4,233,252 to 4,234,979 _19525 PS417_19530: PS417_19530 - peroxiredoxin, at 4,234,980 to 4,235,831 _19530 PS417_19535: PS417_19535 - dihydroneopterin aldolase, at 4,235,807 to 4,236,568 _19535 PS417_19540: PS417_19540 - hypothetical protein, at 4,236,640 to 4,239,351 _19540 Position (kb) 4234 4235 4236Strain fitness (log2 ratio) -2 -1 0 1 2at 4236.089 kb on + strand, within PS417_19535at 4236.089 kb on + strand, within PS417_19535at 4236.090 kb on - strand, within PS417_19535at 4236.090 kb on - strand, within PS417_19535at 4236.090 kb on - strand, within PS417_19535at 4236.485 kb on + strand, within PS417_19535at 4236.485 kb on + strand, within PS417_19535at 4236.567 kb on - strandat 4236.581 kb on + strandat 4236.582 kb on - strandat 4236.784 kb on + strandat 4236.787 kb on + strandat 4236.787 kb on + strandat 4236.787 kb on + strandat 4236.788 kb on - strandat 4236.808 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Gentamicin 0.008 mg/ml
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4,236,089 + PS417_19535 0.37 -0.4
4,236,089 + PS417_19535 0.37 +0.5
4,236,090 - PS417_19535 0.37 -0.1
4,236,090 - PS417_19535 0.37 -1.1
4,236,090 - PS417_19535 0.37 +0.8
4,236,485 + PS417_19535 0.89 -0.1
4,236,485 + PS417_19535 0.89 +0.4
4,236,567 - +0.0
4,236,581 + +0.0
4,236,582 - +1.8
4,236,784 + -0.4
4,236,787 + -0.3
4,236,787 + -1.8
4,236,787 + +0.0
4,236,788 - +0.8
4,236,808 - -1.8

Or see this region's nucleotide sequence