Experiment: Gentamicin 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_19525 and PS417_19530 are separated by 0 nucleotides PS417_19530 and PS417_19535 overlap by 25 nucleotides PS417_19535 and PS417_19540 are separated by 71 nucleotides
PS417_19525: PS417_19525 - thiol:disulfide interchange protein, at 4,233,252 to 4,234,979
_19525
PS417_19530: PS417_19530 - peroxiredoxin, at 4,234,980 to 4,235,831
_19530
PS417_19535: PS417_19535 - dihydroneopterin aldolase, at 4,235,807 to 4,236,568
_19535
PS417_19540: PS417_19540 - hypothetical protein, at 4,236,640 to 4,239,351
_19540
Position (kb)
4234
4235
4236 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4236.089 kb on + strand, within PS417_19535 at 4236.089 kb on + strand, within PS417_19535 at 4236.090 kb on - strand, within PS417_19535 at 4236.090 kb on - strand, within PS417_19535 at 4236.090 kb on - strand, within PS417_19535 at 4236.485 kb on + strand, within PS417_19535 at 4236.485 kb on + strand, within PS417_19535 at 4236.567 kb on - strand at 4236.581 kb on + strand at 4236.582 kb on - strand at 4236.784 kb on + strand at 4236.787 kb on + strand at 4236.787 kb on + strand at 4236.787 kb on + strand at 4236.788 kb on - strand at 4236.808 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Gentamicin 0.008 mg/ml remove 4,236,089 + PS417_19535 0.37 -0.4 4,236,089 + PS417_19535 0.37 +0.5 4,236,090 - PS417_19535 0.37 -0.1 4,236,090 - PS417_19535 0.37 -1.1 4,236,090 - PS417_19535 0.37 +0.8 4,236,485 + PS417_19535 0.89 -0.1 4,236,485 + PS417_19535 0.89 +0.4 4,236,567 - +0.0 4,236,581 + +0.0 4,236,582 - +1.8 4,236,784 + -0.4 4,236,787 + -0.3 4,236,787 + -1.8 4,236,787 + +0.0 4,236,788 - +0.8 4,236,808 - -1.8
Or see this region's nucleotide sequence