Experiment: Gentamicin 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_19515 and PS417_19520 overlap by 4 nucleotides PS417_19520 and PS417_19525 are separated by 161 nucleotides PS417_19525 and PS417_19530 are separated by 0 nucleotides PS417_19530 and PS417_19535 overlap by 25 nucleotides
PS417_19515: PS417_19515 - histidine kinase, at 4,231,091 to 4,232,413
_19515
PS417_19520: PS417_19520 - transcriptional regulator, at 4,232,410 to 4,233,090
_19520
PS417_19525: PS417_19525 - thiol:disulfide interchange protein, at 4,233,252 to 4,234,979
_19525
PS417_19530: PS417_19530 - peroxiredoxin, at 4,234,980 to 4,235,831
_19530
PS417_19535: PS417_19535 - dihydroneopterin aldolase, at 4,235,807 to 4,236,568
_19535
Position (kb) 4233
4234
4235 Strain fitness (log2 ratio) -1
0
1
2 at 4232.556 kb on - strand, within PS417_19520 at 4232.798 kb on + strand, within PS417_19520 at 4232.799 kb on - strand, within PS417_19520 at 4233.082 kb on + strand at 4233.104 kb on + strand at 4233.105 kb on - strand at 4233.175 kb on + strand at 4233.180 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Gentamicin 0.008 mg/ml remove 4,232,556 - PS417_19520 0.21 +0.4 4,232,798 + PS417_19520 0.57 +0.6 4,232,799 - PS417_19520 0.57 +1.7 4,233,082 + +1.1 4,233,104 + +1.5 4,233,105 - +1.4 4,233,175 + +2.5 4,233,180 + -0.5
Or see this region's nucleotide sequence