Experiment: Gentamicin 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_19210 and PS417_19215 are separated by 91 nucleotides PS417_19215 and PS417_19220 are separated by 102 nucleotides
PS417_19210: PS417_19210 - acetyl-CoA acetyltransferase, at 4,162,653 to 4,163,837
_19210
PS417_19215: PS417_19215 - polyphosphate kinase, at 4,163,929 to 4,165,455
_19215
PS417_19220: PS417_19220 - hypothetical protein, at 4,165,558 to 4,170,402
_19220
Position (kb) 4163
4164
4165
4166 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4163.248 kb on + strand, within PS417_19210 at 4163.248 kb on + strand, within PS417_19210 at 4163.248 kb on + strand, within PS417_19210 at 4163.249 kb on - strand, within PS417_19210 at 4163.332 kb on + strand, within PS417_19210 at 4163.332 kb on + strand, within PS417_19210 at 4163.332 kb on + strand, within PS417_19210 at 4163.332 kb on + strand, within PS417_19210 at 4163.333 kb on - strand, within PS417_19210 at 4163.333 kb on - strand, within PS417_19210 at 4163.333 kb on - strand, within PS417_19210 at 4163.333 kb on - strand, within PS417_19210 at 4163.333 kb on - strand, within PS417_19210 at 4163.405 kb on - strand, within PS417_19210 at 4163.644 kb on + strand, within PS417_19210 at 4163.644 kb on + strand, within PS417_19210 at 4163.826 kb on + strand at 4163.827 kb on - strand at 4163.827 kb on - strand at 4163.842 kb on + strand at 4163.881 kb on - strand at 4163.931 kb on - strand at 4164.117 kb on - strand, within PS417_19215 at 4164.425 kb on + strand, within PS417_19215 at 4164.477 kb on - strand, within PS417_19215 at 4164.477 kb on - strand, within PS417_19215 at 4164.622 kb on + strand, within PS417_19215 at 4164.623 kb on - strand, within PS417_19215 at 4164.842 kb on + strand, within PS417_19215 at 4165.409 kb on + strand at 4165.409 kb on + strand at 4165.410 kb on - strand at 4165.486 kb on + strand at 4165.582 kb on - strand at 4165.637 kb on - strand at 4165.682 kb on + strand at 4165.682 kb on + strand at 4165.682 kb on + strand at 4165.783 kb on - strand at 4165.783 kb on - strand at 4165.812 kb on + strand at 4166.013 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Gentamicin 0.008 mg/ml remove 4,163,248 + PS417_19210 0.50 -2.4 4,163,248 + PS417_19210 0.50 -0.6 4,163,248 + PS417_19210 0.50 +0.0 4,163,249 - PS417_19210 0.50 +1.8 4,163,332 + PS417_19210 0.57 +2.1 4,163,332 + PS417_19210 0.57 -0.5 4,163,332 + PS417_19210 0.57 +0.4 4,163,332 + PS417_19210 0.57 +0.2 4,163,333 - PS417_19210 0.57 +1.1 4,163,333 - PS417_19210 0.57 -0.2 4,163,333 - PS417_19210 0.57 -1.3 4,163,333 - PS417_19210 0.57 -1.5 4,163,333 - PS417_19210 0.57 +0.5 4,163,405 - PS417_19210 0.63 -0.8 4,163,644 + PS417_19210 0.84 -1.4 4,163,644 + PS417_19210 0.84 -1.6 4,163,826 + -1.8 4,163,827 - +1.6 4,163,827 - -0.2 4,163,842 + +0.5 4,163,881 - +0.5 4,163,931 - +0.5 4,164,117 - PS417_19215 0.12 -0.2 4,164,425 + PS417_19215 0.32 +0.3 4,164,477 - PS417_19215 0.36 -1.9 4,164,477 - PS417_19215 0.36 -1.2 4,164,622 + PS417_19215 0.45 -1.8 4,164,623 - PS417_19215 0.45 +0.5 4,164,842 + PS417_19215 0.60 -2.3 4,165,409 + +1.6 4,165,409 + +0.8 4,165,410 - +0.2 4,165,486 + +0.3 4,165,582 - +0.1 4,165,637 - +0.1 4,165,682 + -1.8 4,165,682 + -0.6 4,165,682 + +0.5 4,165,783 - +2.3 4,165,783 - -0.1 4,165,812 + +1.3 4,166,013 - +0.0
Or see this region's nucleotide sequence