Strain Fitness in Pseudomonas simiae WCS417 around PS417_19140

Experiment: Gentamicin 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_19135 and PS417_19140 are separated by 21 nucleotidesPS417_19140 and PS417_19145 are separated by 46 nucleotides PS417_19135: PS417_19135 - DeoR faimly transcriptional regulator, at 4,133,261 to 4,134,187 _19135 PS417_19140: PS417_19140 - TenA family transcriptional regulator, at 4,134,209 to 4,135,009 _19140 PS417_19145: PS417_19145 - membrane protein, at 4,135,056 to 4,137,518 _19145 Position (kb) 4134 4135 4136Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 4133.246 kb on - strandat 4133.246 kb on - strandat 4133.544 kb on - strand, within PS417_19135at 4133.958 kb on + strand, within PS417_19135at 4133.958 kb on + strand, within PS417_19135at 4134.141 kb on - strandat 4134.141 kb on - strandat 4134.141 kb on - strandat 4134.205 kb on + strandat 4134.300 kb on + strand, within PS417_19140at 4134.300 kb on + strand, within PS417_19140at 4134.300 kb on + strand, within PS417_19140at 4134.301 kb on + strand, within PS417_19140at 4134.301 kb on - strand, within PS417_19140at 4134.301 kb on - strand, within PS417_19140at 4134.306 kb on + strand, within PS417_19140at 4134.306 kb on + strand, within PS417_19140at 4134.307 kb on - strand, within PS417_19140at 4134.307 kb on - strand, within PS417_19140at 4134.307 kb on - strand, within PS417_19140at 4134.307 kb on - strand, within PS417_19140at 4134.307 kb on - strand, within PS417_19140at 4134.307 kb on - strandat 4134.307 kb on - strand, within PS417_19140at 4134.486 kb on + strand, within PS417_19140at 4134.487 kb on - strand, within PS417_19140at 4134.543 kb on + strand, within PS417_19140at 4134.544 kb on - strand, within PS417_19140at 4134.719 kb on - strand, within PS417_19140at 4134.798 kb on + strand, within PS417_19140at 4134.799 kb on - strand, within PS417_19140at 4134.799 kb on - strand, within PS417_19140at 4134.799 kb on - strand, within PS417_19140at 4134.799 kb on - strand, within PS417_19140at 4134.841 kb on - strand, within PS417_19140at 4134.889 kb on - strand, within PS417_19140at 4134.925 kb on + strand, within PS417_19140at 4135.038 kb on + strandat 4135.038 kb on + strandat 4135.038 kb on + strandat 4135.038 kb on + strandat 4135.039 kb on - strandat 4135.122 kb on - strandat 4135.122 kb on - strandat 4135.347 kb on + strand, within PS417_19145at 4135.513 kb on + strand, within PS417_19145at 4135.513 kb on + strand, within PS417_19145at 4135.513 kb on + strand, within PS417_19145at 4135.513 kb on + strand, within PS417_19145at 4135.513 kb on + strand, within PS417_19145at 4135.513 kb on + strand, within PS417_19145at 4135.513 kb on + strand, within PS417_19145at 4135.513 kb on + strand, within PS417_19145at 4135.513 kb on + strand, within PS417_19145at 4135.513 kb on + strand, within PS417_19145at 4135.513 kb on + strand, within PS417_19145at 4135.514 kb on - strand, within PS417_19145at 4135.514 kb on - strand, within PS417_19145at 4135.514 kb on - strand, within PS417_19145at 4135.514 kb on - strand, within PS417_19145at 4135.517 kb on + strand, within PS417_19145at 4135.517 kb on + strand, within PS417_19145at 4135.518 kb on - strand, within PS417_19145at 4135.518 kb on - strand, within PS417_19145at 4135.518 kb on - strand, within PS417_19145at 4135.518 kb on - strandat 4135.755 kb on + strand, within PS417_19145at 4135.766 kb on + strand, within PS417_19145at 4135.767 kb on - strand, within PS417_19145at 4135.913 kb on - strand, within PS417_19145at 4135.951 kb on + strand, within PS417_19145at 4135.952 kb on - strand, within PS417_19145

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Per-strain Table

Position Strand Gene LocusTag Fraction Gentamicin 0.008 mg/ml
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4,133,246 - +0.0
4,133,246 - -0.2
4,133,544 - PS417_19135 0.31 -2.1
4,133,958 + PS417_19135 0.75 -0.1
4,133,958 + PS417_19135 0.75 -0.1
4,134,141 - +0.9
4,134,141 - -1.0
4,134,141 - +0.3
4,134,205 + +0.9
4,134,300 + PS417_19140 0.11 -2.1
4,134,300 + PS417_19140 0.11 -0.2
4,134,300 + PS417_19140 0.11 -0.6
4,134,301 + PS417_19140 0.11 -2.2
4,134,301 - PS417_19140 0.11 +0.8
4,134,301 - PS417_19140 0.11 -0.7
4,134,306 + PS417_19140 0.12 -1.7
4,134,306 + PS417_19140 0.12 +3.5
4,134,307 - PS417_19140 0.12 -1.0
4,134,307 - PS417_19140 0.12 +2.1
4,134,307 - PS417_19140 0.12 +2.5
4,134,307 - PS417_19140 0.12 +0.5
4,134,307 - PS417_19140 0.12 +0.6
4,134,307 - -0.2
4,134,307 - PS417_19140 0.12 +1.3
4,134,486 + PS417_19140 0.35 +1.9
4,134,487 - PS417_19140 0.35 +1.8
4,134,543 + PS417_19140 0.42 -2.2
4,134,544 - PS417_19140 0.42 -1.5
4,134,719 - PS417_19140 0.64 -0.2
4,134,798 + PS417_19140 0.74 +1.0
4,134,799 - PS417_19140 0.74 +0.0
4,134,799 - PS417_19140 0.74 -1.2
4,134,799 - PS417_19140 0.74 +0.9
4,134,799 - PS417_19140 0.74 +0.3
4,134,841 - PS417_19140 0.79 -0.1
4,134,889 - PS417_19140 0.85 +1.9
4,134,925 + PS417_19140 0.89 +4.5
4,135,038 + -1.2
4,135,038 + +0.9
4,135,038 + -0.3
4,135,038 + +0.2
4,135,039 - +0.3
4,135,122 - +1.3
4,135,122 - -0.3
4,135,347 + PS417_19145 0.12 +0.2
4,135,513 + PS417_19145 0.19 +2.0
4,135,513 + PS417_19145 0.19 -0.9
4,135,513 + PS417_19145 0.19 +1.6
4,135,513 + PS417_19145 0.19 -0.0
4,135,513 + PS417_19145 0.19 -0.7
4,135,513 + PS417_19145 0.19 -0.4
4,135,513 + PS417_19145 0.19 +0.2
4,135,513 + PS417_19145 0.19 -1.8
4,135,513 + PS417_19145 0.19 -0.2
4,135,513 + PS417_19145 0.19 -1.1
4,135,513 + PS417_19145 0.19 -0.5
4,135,514 - PS417_19145 0.19 -2.0
4,135,514 - PS417_19145 0.19 -1.9
4,135,514 - PS417_19145 0.19 +0.7
4,135,514 - PS417_19145 0.19 -0.8
4,135,517 + PS417_19145 0.19 +0.3
4,135,517 + PS417_19145 0.19 -0.7
4,135,518 - PS417_19145 0.19 +0.0
4,135,518 - PS417_19145 0.19 -0.4
4,135,518 - PS417_19145 0.19 -1.1
4,135,518 - +4.3
4,135,755 + PS417_19145 0.28 -0.4
4,135,766 + PS417_19145 0.29 -1.8
4,135,767 - PS417_19145 0.29 -1.4
4,135,913 - PS417_19145 0.35 -1.8
4,135,951 + PS417_19145 0.36 +0.2
4,135,952 - PS417_19145 0.36 -0.8

Or see this region's nucleotide sequence