Experiment: Gentamicin 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_01870 and PS417_01875 are separated by 144 nucleotides PS417_01875 and PS417_01880 are separated by 105 nucleotides PS417_01880 and PS417_01885 are separated by 12 nucleotides
PS417_01870: PS417_01870 - ubiquinone biosynthesis methyltransferase UbiE, at 415,012 to 415,782
_01870
PS417_01875: PS417_01875 - polyhydroxyalkanoic acid system protein, at 415,927 to 416,202
_01875
PS417_01880: PS417_01880 - poly(3-hydroxyalkanoate) granule-associated protein PhaI, at 416,308 to 416,730
_01880
PS417_01885: PS417_01885 - poly(3-hydroxyalkanoate) granule-associated protein PhaF, at 416,743 to 417,726
_01885
Position (kb) 416
417 Strain fitness (log2 ratio) -1
0
1
2
3
4
5 at 415.783 kb on - strand at 415.783 kb on - strand at 415.817 kb on - strand at 415.831 kb on - strand at 415.855 kb on + strand at 415.855 kb on + strand at 415.855 kb on + strand at 415.856 kb on - strand at 415.856 kb on - strand at 415.936 kb on - strand at 415.936 kb on - strand at 416.049 kb on + strand, within PS417_01875 at 416.087 kb on + strand, within PS417_01875 at 416.289 kb on - strand at 416.367 kb on + strand, within PS417_01880 at 416.368 kb on - strand, within PS417_01880 at 416.411 kb on - strand, within PS417_01880 at 416.547 kb on + strand, within PS417_01880 at 416.590 kb on - strand, within PS417_01880 at 416.705 kb on + strand at 416.705 kb on + strand at 416.706 kb on - strand at 416.706 kb on - strand at 416.706 kb on - strand at 416.721 kb on + strand at 416.728 kb on + strand at 416.728 kb on + strand at 416.760 kb on + strand at 416.869 kb on + strand, within PS417_01885 at 416.870 kb on - strand, within PS417_01885 at 416.870 kb on - strand, within PS417_01885 at 417.132 kb on + strand, within PS417_01885 at 417.621 kb on + strand, within PS417_01885 at 417.622 kb on - strand, within PS417_01885
Per-strain Table
Position Strand Gene LocusTag Fraction Gentamicin 0.008 mg/ml remove 415,783 - +4.5 415,783 - +4.9 415,817 - -0.4 415,831 - +0.4 415,855 + -0.0 415,855 + -0.8 415,855 + +1.0 415,856 - +0.4 415,856 - +1.7 415,936 - +0.5 415,936 - -1.5 416,049 + PS417_01875 0.44 -0.8 416,087 + PS417_01875 0.58 -0.5 416,289 - -0.9 416,367 + PS417_01880 0.14 -0.6 416,368 - PS417_01880 0.14 +0.1 416,411 - PS417_01880 0.24 +1.1 416,547 + PS417_01880 0.57 +3.8 416,590 - PS417_01880 0.67 -0.1 416,705 + -0.9 416,705 + -0.5 416,706 - +0.7 416,706 - -1.5 416,706 - -0.4 416,721 + +0.2 416,728 + +1.9 416,728 + -0.6 416,760 + +1.7 416,869 + PS417_01885 0.13 +0.8 416,870 - PS417_01885 0.13 -0.4 416,870 - PS417_01885 0.13 -0.1 417,132 + PS417_01885 0.40 +1.3 417,621 + PS417_01885 0.89 +0.0 417,622 - PS417_01885 0.89 +1.2
Or see this region's nucleotide sequence