Experiment: Gentamicin 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_18420 and PS417_18425 are separated by 30 nucleotides PS417_18425 and PS417_18430 are separated by 247 nucleotides PS417_18430 and PS417_18435 are separated by 211 nucleotides PS417_18435 and PS417_18440 are separated by 95 nucleotides PS417_18440 and PS417_18445 are separated by 19 nucleotides
PS417_18420: PS417_18420 - deoxyribonuclease, at 4,009,750 to 4,010,439
_18420
PS417_18425: PS417_18425 - sporulation protein, at 4,010,470 to 4,010,850
_18425
PS417_18430: PS417_18430 - carbon storage regulator CsrA, at 4,011,098 to 4,011,292
_18430
PS417_18435: PS417_18435 - hypothetical protein, at 4,011,504 to 4,011,743
_18435
PS417_18440: PS417_18440 - hypothetical protein, at 4,011,839 to 4,012,132
_18440
PS417_18445: PS417_18445 - glycerol-3-phosphatase, at 4,012,152 to 4,012,829
_18445
Position (kb) 4011
4012 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4010.258 kb on - strand, within PS417_18420 at 4010.258 kb on - strand, within PS417_18420 at 4010.312 kb on + strand, within PS417_18420 at 4010.313 kb on - strand, within PS417_18420 at 4010.628 kb on - strand, within PS417_18425 at 4010.844 kb on + strand at 4010.884 kb on + strand at 4010.943 kb on - strand at 4010.955 kb on + strand at 4010.955 kb on + strand at 4010.956 kb on - strand at 4010.975 kb on + strand at 4010.975 kb on + strand at 4010.975 kb on + strand at 4011.029 kb on + strand at 4011.029 kb on + strand at 4011.030 kb on - strand at 4011.034 kb on + strand at 4011.034 kb on + strand at 4011.035 kb on - strand at 4011.035 kb on - strand at 4011.035 kb on - strand at 4011.082 kb on - strand at 4011.104 kb on - strand at 4011.105 kb on + strand at 4011.105 kb on + strand at 4011.105 kb on + strand at 4011.106 kb on - strand at 4011.171 kb on + strand, within PS417_18430 at 4011.434 kb on + strand at 4011.434 kb on + strand at 4011.434 kb on + strand at 4011.435 kb on - strand at 4011.547 kb on + strand, within PS417_18435 at 4011.716 kb on + strand at 4011.717 kb on - strand, within PS417_18435 at 4011.773 kb on + strand at 4011.777 kb on + strand at 4011.777 kb on + strand at 4011.778 kb on - strand at 4011.797 kb on + strand at 4011.797 kb on + strand at 4011.797 kb on + strand at 4011.798 kb on - strand at 4011.798 kb on - strand at 4011.798 kb on - strand at 4011.798 kb on - strand at 4011.911 kb on - strand, within PS417_18440 at 4011.911 kb on - strand, within PS417_18440 at 4011.911 kb on - strand, within PS417_18440 at 4011.911 kb on - strand at 4011.915 kb on + strand, within PS417_18440 at 4011.915 kb on + strand, within PS417_18440 at 4011.916 kb on - strand, within PS417_18440 at 4012.174 kb on + strand at 4012.175 kb on - strand at 4012.200 kb on + strand at 4012.201 kb on - strand at 4012.207 kb on - strand at 4012.207 kb on - strand at 4012.216 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Gentamicin 0.008 mg/ml remove 4,010,258 - PS417_18420 0.74 +1.0 4,010,258 - PS417_18420 0.74 -1.0 4,010,312 + PS417_18420 0.81 +0.3 4,010,313 - PS417_18420 0.82 -0.8 4,010,628 - PS417_18425 0.41 -0.8 4,010,844 + +2.6 4,010,884 + +1.1 4,010,943 - -0.5 4,010,955 + +1.5 4,010,955 + -1.7 4,010,956 - -0.9 4,010,975 + +2.0 4,010,975 + +1.0 4,010,975 + +0.5 4,011,029 + -0.3 4,011,029 + +0.6 4,011,030 - -0.8 4,011,034 + +1.8 4,011,034 + +1.3 4,011,035 - -1.1 4,011,035 - -2.6 4,011,035 - -0.3 4,011,082 - -2.2 4,011,104 - +0.3 4,011,105 + -1.1 4,011,105 + -1.4 4,011,105 + -1.3 4,011,106 - -0.9 4,011,171 + PS417_18430 0.37 -3.7 4,011,434 + -2.4 4,011,434 + -1.7 4,011,434 + -1.0 4,011,435 - +2.0 4,011,547 + PS417_18435 0.18 -1.7 4,011,716 + -0.7 4,011,717 - PS417_18435 0.89 -1.4 4,011,773 + +0.7 4,011,777 + -1.5 4,011,777 + -0.7 4,011,778 - +1.3 4,011,797 + -0.9 4,011,797 + -1.1 4,011,797 + -1.4 4,011,798 - -0.3 4,011,798 - +0.3 4,011,798 - +0.0 4,011,798 - -0.7 4,011,911 - PS417_18440 0.24 -2.1 4,011,911 - PS417_18440 0.24 -1.0 4,011,911 - PS417_18440 0.24 -0.2 4,011,911 - +1.3 4,011,915 + PS417_18440 0.26 +0.3 4,011,915 + PS417_18440 0.26 -0.2 4,011,916 - PS417_18440 0.26 -1.3 4,012,174 + -0.2 4,012,175 - -0.9 4,012,200 + -3.1 4,012,201 - -0.7 4,012,207 - +0.9 4,012,207 - +0.1 4,012,216 + +1.6
Or see this region's nucleotide sequence