Experiment: Gentamicin 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_01780 and PS417_01785 overlap by 4 nucleotides PS417_01785 and PS417_01790 are separated by 266 nucleotides PS417_01790 and PS417_01795 overlap by 8 nucleotides
PS417_01780: PS417_01780 - proline iminopeptidase, at 395,874 to 396,845
_01780
PS417_01785: PS417_01785 - D-tyrosyl-tRNA(Tyr) deacylase, at 396,842 to 397,279
_01785
PS417_01790: PS417_01790 - glucan biosynthesis protein G, at 397,546 to 399,282
_01790
PS417_01795: PS417_01795 - glucosyltransferase MdoH, at 399,275 to 401,845
_01795
Position (kb) 397
398
399
400 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 396.570 kb on + strand, within PS417_01780 at 396.570 kb on + strand, within PS417_01780 at 396.570 kb on + strand, within PS417_01780 at 396.668 kb on + strand, within PS417_01780 at 396.669 kb on - strand, within PS417_01780 at 396.979 kb on - strand, within PS417_01785 at 396.995 kb on + strand, within PS417_01785 at 397.174 kb on - strand at 397.299 kb on + strand at 397.332 kb on - strand at 397.368 kb on + strand at 397.372 kb on + strand at 397.372 kb on + strand at 397.417 kb on + strand at 397.421 kb on + strand at 397.422 kb on - strand at 397.495 kb on + strand at 397.495 kb on + strand at 397.497 kb on + strand at 397.497 kb on + strand at 397.497 kb on + strand at 397.497 kb on + strand at 397.497 kb on + strand at 397.497 kb on + strand at 397.497 kb on + strand at 397.497 kb on + strand at 397.497 kb on + strand at 397.497 kb on + strand at 397.497 kb on + strand at 397.497 kb on + strand at 397.497 kb on + strand at 397.498 kb on - strand at 397.498 kb on - strand at 397.498 kb on - strand at 397.498 kb on - strand at 397.498 kb on - strand at 397.498 kb on - strand at 397.498 kb on - strand at 397.498 kb on - strand at 397.498 kb on - strand at 397.498 kb on - strand at 397.498 kb on - strand at 397.498 kb on - strand at 397.498 kb on - strand at 397.498 kb on - strand at 397.498 kb on - strand at 397.498 kb on - strand at 397.502 kb on - strand at 397.554 kb on + strand at 397.708 kb on + strand at 397.766 kb on - strand, within PS417_01790 at 397.912 kb on + strand, within PS417_01790 at 397.912 kb on + strand, within PS417_01790 at 397.913 kb on - strand, within PS417_01790 at 398.087 kb on - strand, within PS417_01790 at 398.350 kb on + strand, within PS417_01790 at 398.351 kb on - strand, within PS417_01790 at 398.351 kb on - strand, within PS417_01790 at 398.351 kb on - strand, within PS417_01790 at 398.389 kb on + strand, within PS417_01790 at 398.576 kb on - strand, within PS417_01790 at 398.576 kb on - strand, within PS417_01790 at 398.576 kb on - strand, within PS417_01790 at 398.869 kb on + strand, within PS417_01790 at 398.870 kb on - strand, within PS417_01790 at 399.259 kb on + strand at 399.259 kb on + strand at 399.259 kb on + strand at 399.280 kb on + strand at 399.281 kb on - strand at 399.315 kb on - strand at 399.328 kb on - strand at 399.657 kb on + strand, within PS417_01795 at 399.658 kb on - strand, within PS417_01795 at 399.749 kb on + strand, within PS417_01795 at 399.750 kb on - strand, within PS417_01795 at 399.840 kb on + strand, within PS417_01795 at 399.958 kb on + strand, within PS417_01795 at 399.958 kb on + strand, within PS417_01795 at 399.959 kb on - strand, within PS417_01795 at 400.144 kb on + strand, within PS417_01795 at 400.144 kb on + strand, within PS417_01795 at 400.144 kb on + strand, within PS417_01795 at 400.227 kb on - strand, within PS417_01795
Per-strain Table
Position Strand Gene LocusTag Fraction Gentamicin 0.008 mg/ml remove 396,570 + PS417_01780 0.72 +2.0 396,570 + PS417_01780 0.72 -1.1 396,570 + PS417_01780 0.72 +0.7 396,668 + PS417_01780 0.82 -0.8 396,669 - PS417_01780 0.82 -1.4 396,979 - PS417_01785 0.31 +2.8 396,995 + PS417_01785 0.35 -0.8 397,174 - +0.6 397,299 + -0.6 397,332 - -1.2 397,368 + +0.3 397,372 + +2.2 397,372 + +0.9 397,417 + +0.3 397,421 + +0.8 397,422 - -2.2 397,495 + +1.2 397,495 + -0.8 397,497 + -0.2 397,497 + +0.2 397,497 + -0.5 397,497 + -1.0 397,497 + -1.3 397,497 + -2.0 397,497 + -0.3 397,497 + -0.3 397,497 + +0.2 397,497 + -1.3 397,497 + -2.4 397,497 + -0.1 397,497 + +0.9 397,498 - +1.0 397,498 - -2.5 397,498 - -0.0 397,498 - -1.7 397,498 - +2.2 397,498 - -1.1 397,498 - -1.1 397,498 - -2.8 397,498 - +0.0 397,498 - -1.0 397,498 - +0.4 397,498 - -0.2 397,498 - -2.3 397,498 - -1.2 397,498 - -0.2 397,498 - -2.1 397,502 - -2.2 397,554 + -1.5 397,708 + -2.1 397,766 - PS417_01790 0.13 -0.9 397,912 + PS417_01790 0.21 +0.3 397,912 + PS417_01790 0.21 -1.8 397,913 - PS417_01790 0.21 -2.3 398,087 - PS417_01790 0.31 -4.2 398,350 + PS417_01790 0.46 -1.5 398,351 - PS417_01790 0.46 -1.8 398,351 - PS417_01790 0.46 -1.5 398,351 - PS417_01790 0.46 +0.6 398,389 + PS417_01790 0.49 -1.2 398,576 - PS417_01790 0.59 -2.8 398,576 - PS417_01790 0.59 -1.8 398,576 - PS417_01790 0.59 -0.8 398,869 + PS417_01790 0.76 -2.3 398,870 - PS417_01790 0.76 +0.3 399,259 + -1.0 399,259 + -1.9 399,259 + +0.6 399,280 + +0.3 399,281 - -1.3 399,315 - +1.6 399,328 - -1.2 399,657 + PS417_01795 0.15 -1.3 399,658 - PS417_01795 0.15 -0.5 399,749 + PS417_01795 0.18 -2.6 399,750 - PS417_01795 0.18 -0.4 399,840 + PS417_01795 0.22 -1.3 399,958 + PS417_01795 0.27 -1.6 399,958 + PS417_01795 0.27 -2.6 399,959 - PS417_01795 0.27 -3.6 400,144 + PS417_01795 0.34 -2.0 400,144 + PS417_01795 0.34 -2.1 400,144 + PS417_01795 0.34 -1.2 400,227 - PS417_01795 0.37 -1.0
Or see this region's nucleotide sequence