Strain Fitness in Pseudomonas simiae WCS417 around PS417_17935
Experiment: Gentamicin 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Gentamicin 0.008 mg/ml |
---|---|---|---|---|---|
remove | |||||
3,913,347 | + | PS417_17930 | 0.44 | -1.1 | |
3,913,823 | + | PS417_17930 | 0.76 | +0.8 | |
3,914,090 | - | +0.9 | |||
3,914,262 | - | PS417_17935 | 0.27 | +1.0 | |
3,914,330 | - | PS417_17935 | 0.43 | +0.7 | |
3,914,480 | + | PS417_17935 | 0.78 | +0.9 | |
3,914,480 | + | -0.7 | |||
3,914,480 | + | PS417_17935 | 0.78 | +1.2 | |
3,914,480 | + | PS417_17935 | 0.78 | +0.3 | |
3,915,034 | + | PS417_17940 | 0.28 | -0.4 | |
3,915,034 | + | PS417_17940 | 0.28 | -0.4 | |
3,915,056 | + | PS417_17940 | 0.30 | -0.1 | |
3,915,057 | - | PS417_17940 | 0.30 | +0.5 | |
3,915,074 | + | PS417_17940 | 0.31 | +0.2 | |
3,915,075 | - | PS417_17940 | 0.31 | +0.8 | |
3,915,323 | + | PS417_17940 | 0.50 | +0.3 | |
3,915,323 | + | PS417_17940 | 0.50 | -1.3 | |
3,915,323 | + | PS417_17940 | 0.50 | +3.6 | |
3,915,440 | + | PS417_17940 | 0.58 | +0.2 |
Or see this region's nucleotide sequence