Strain Fitness in Pseudomonas simiae WCS417 around PS417_17775
Experiment: Gentamicin 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
| Position | Strand | Gene | LocusTag | Fraction | Gentamicin 0.008 mg/ml |
|---|---|---|---|---|---|
| remove | |||||
| 3,880,044 | - | PS417_17770 | 0.69 | +1.7 | |
| 3,880,047 | + | PS417_17770 | 0.69 | -1.2 | |
| 3,880,121 | + | PS417_17770 | 0.72 | +0.3 | |
| 3,880,122 | - | PS417_17770 | 0.72 | -1.2 | |
| 3,880,261 | - | PS417_17770 | 0.78 | -0.2 | |
| 3,880,380 | - | PS417_17770 | 0.83 | -0.8 | |
| 3,880,655 | - | -0.5 | |||
| 3,880,655 | - | -1.3 | |||
| 3,880,658 | + | +1.4 | |||
| 3,880,658 | + | +0.3 | |||
| 3,880,716 | + | +0.2 | |||
| 3,881,441 | + | -0.6 | |||
| 3,881,441 | + | -0.1 | |||
| 3,881,442 | - | +0.7 | |||
| 3,881,701 | + | -1.6 | |||
| 3,881,702 | - | +1.1 | |||
| 3,881,720 | + | -0.2 | |||
| 3,881,724 | + | -2.3 | |||
| 3,881,724 | + | +0.8 | |||
| 3,881,725 | - | +0.7 | |||
| 3,881,725 | - | +1.3 | |||
| 3,881,727 | + | -0.2 | |||
| 3,882,140 | + | PS417_17780 | 0.58 | +3.1 | |
| 3,882,141 | - | PS417_17780 | 0.58 | -2.0 | |
| 3,882,410 | + | -2.3 | |||
| 3,882,421 | + | -0.2 |
Or see this region's nucleotide sequence