Experiment: Gentamicin 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_17670 and PS417_17675 overlap by 4 nucleotides PS417_17675 and PS417_17680 overlap by 1 nucleotides PS417_17680 and PS417_17685 are separated by 13 nucleotides
PS417_17670: PS417_17670 - ABC transporter permease, at 3,857,359 to 3,858,369
_17670
PS417_17675: PS417_17675 - ABC transporter, at 3,858,366 to 3,859,115
_17675
PS417_17680: PS417_17680 - ABC transporter, at 3,859,115 to 3,859,810
_17680
PS417_17685: PS417_17685 - allantoate amidohydrolase, at 3,859,824 to 3,861,092
_17685
Position (kb)
3858
3859
3860 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3857.528 kb on - strand, within PS417_17670 at 3857.704 kb on + strand, within PS417_17670 at 3857.704 kb on + strand, within PS417_17670 at 3857.743 kb on + strand, within PS417_17670 at 3857.744 kb on - strand, within PS417_17670 at 3857.744 kb on - strand, within PS417_17670 at 3857.756 kb on - strand, within PS417_17670 at 3858.627 kb on - strand, within PS417_17675 at 3859.095 kb on + strand at 3859.133 kb on - strand at 3859.142 kb on + strand at 3859.145 kb on + strand at 3859.452 kb on - strand, within PS417_17680 at 3859.452 kb on - strand, within PS417_17680 at 3859.712 kb on + strand, within PS417_17680 at 3859.712 kb on + strand, within PS417_17680 at 3859.830 kb on - strand at 3860.039 kb on + strand, within PS417_17685
Per-strain Table
Position Strand Gene LocusTag Fraction Gentamicin 0.008 mg/ml remove 3,857,528 - PS417_17670 0.17 +0.2 3,857,704 + PS417_17670 0.34 +0.8 3,857,704 + PS417_17670 0.34 +0.8 3,857,743 + PS417_17670 0.38 -0.3 3,857,744 - PS417_17670 0.38 -1.3 3,857,744 - PS417_17670 0.38 +0.9 3,857,756 - PS417_17670 0.39 +1.3 3,858,627 - PS417_17675 0.35 -2.1 3,859,095 + +0.3 3,859,133 - -0.2 3,859,142 + -0.6 3,859,145 + -0.0 3,859,452 - PS417_17680 0.48 +0.1 3,859,452 - PS417_17680 0.48 +2.2 3,859,712 + PS417_17680 0.86 -1.1 3,859,712 + PS417_17680 0.86 -0.5 3,859,830 - -0.1 3,860,039 + PS417_17685 0.17 +0.3
Or see this region's nucleotide sequence