Experiment: Gentamicin 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_01690 and PS417_01695 are separated by 176 nucleotides PS417_01695 and PS417_01700 are separated by 30 nucleotides PS417_01700 and PS417_01705 are separated by 116 nucleotides
PS417_01690: PS417_01690 - fructose 1,6-bisphosphatase, at 375,386 to 376,396
_01690
PS417_01695: PS417_01695 - hypothetical protein, at 376,573 to 376,827
_01695
PS417_01700: PS417_01700 - lipocalin, at 376,858 to 377,427
_01700
PS417_01705: PS417_01705 - Formiminoglutamic iminohydrolase (EC 3.5.3.13) <small>(from data)</small>, at 377,544 to 378,908
_01705
Position (kb) 376
377
378 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 376.394 kb on + strand at 376.395 kb on - strand at 376.523 kb on + strand at 376.523 kb on + strand at 376.523 kb on + strand at 376.524 kb on - strand at 376.524 kb on - strand at 376.524 kb on - strand at 376.826 kb on - strand at 376.826 kb on - strand at 376.826 kb on - strand at 376.985 kb on - strand, within PS417_01700 at 377.067 kb on + strand, within PS417_01700 at 377.068 kb on - strand, within PS417_01700 at 377.179 kb on - strand, within PS417_01700 at 377.222 kb on - strand, within PS417_01700 at 377.233 kb on + strand, within PS417_01700 at 377.233 kb on + strand, within PS417_01700 at 377.234 kb on - strand, within PS417_01700 at 377.234 kb on - strand, within PS417_01700 at 377.234 kb on - strand, within PS417_01700 at 377.234 kb on - strand, within PS417_01700 at 377.234 kb on - strand, within PS417_01700 at 377.234 kb on - strand, within PS417_01700 at 377.234 kb on - strand, within PS417_01700 at 377.248 kb on + strand, within PS417_01700 at 377.284 kb on + strand, within PS417_01700 at 377.285 kb on - strand, within PS417_01700 at 377.285 kb on - strand, within PS417_01700 at 377.365 kb on + strand, within PS417_01700 at 377.366 kb on - strand, within PS417_01700 at 377.366 kb on - strand, within PS417_01700 at 377.545 kb on + strand at 377.563 kb on - strand at 377.565 kb on + strand at 377.565 kb on + strand at 377.937 kb on + strand, within PS417_01705 at 377.937 kb on + strand, within PS417_01705 at 377.937 kb on + strand, within PS417_01705 at 377.937 kb on + strand, within PS417_01705 at 377.938 kb on - strand, within PS417_01705 at 377.938 kb on - strand, within PS417_01705 at 377.938 kb on - strand, within PS417_01705 at 377.938 kb on - strand, within PS417_01705 at 377.938 kb on - strand, within PS417_01705 at 378.129 kb on + strand, within PS417_01705 at 378.129 kb on + strand, within PS417_01705 at 378.129 kb on + strand, within PS417_01705 at 378.361 kb on + strand, within PS417_01705 at 378.362 kb on - strand, within PS417_01705
Per-strain Table
Position Strand Gene LocusTag Fraction Gentamicin 0.008 mg/ml remove 376,394 + +1.4 376,395 - +0.3 376,523 + +0.2 376,523 + +0.8 376,523 + -2.6 376,524 - -1.1 376,524 - +0.4 376,524 - -0.3 376,826 - -3.2 376,826 - -2.4 376,826 - +0.0 376,985 - PS417_01700 0.22 +0.0 377,067 + PS417_01700 0.37 +0.7 377,068 - PS417_01700 0.37 +0.2 377,179 - PS417_01700 0.56 +1.8 377,222 - PS417_01700 0.64 +1.1 377,233 + PS417_01700 0.66 +1.0 377,233 + PS417_01700 0.66 +0.9 377,234 - PS417_01700 0.66 -0.4 377,234 - PS417_01700 0.66 -0.5 377,234 - PS417_01700 0.66 +0.9 377,234 - PS417_01700 0.66 +0.8 377,234 - PS417_01700 0.66 +1.8 377,234 - PS417_01700 0.66 -2.0 377,234 - PS417_01700 0.66 -2.6 377,248 + PS417_01700 0.68 +0.0 377,284 + PS417_01700 0.75 +1.4 377,285 - PS417_01700 0.75 +0.0 377,285 - PS417_01700 0.75 -1.2 377,365 + PS417_01700 0.89 -0.6 377,366 - PS417_01700 0.89 -0.0 377,366 - PS417_01700 0.89 +0.6 377,545 + -0.8 377,563 - -0.4 377,565 + +0.8 377,565 + +2.0 377,937 + PS417_01705 0.29 +0.1 377,937 + PS417_01705 0.29 +0.6 377,937 + PS417_01705 0.29 -0.3 377,937 + PS417_01705 0.29 +1.1 377,938 - PS417_01705 0.29 +0.4 377,938 - PS417_01705 0.29 -1.1 377,938 - PS417_01705 0.29 +0.8 377,938 - PS417_01705 0.29 +0.1 377,938 - PS417_01705 0.29 -0.8 378,129 + PS417_01705 0.43 -1.2 378,129 + PS417_01705 0.43 -2.8 378,129 + PS417_01705 0.43 +0.4 378,361 + PS417_01705 0.60 -0.2 378,362 - PS417_01705 0.60 +0.4
Or see this region's nucleotide sequence