Experiment: Gentamicin 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_01660 and PS417_01665 are separated by 139 nucleotides PS417_01665 and PS417_01670 are separated by 206 nucleotides PS417_01670 and PS417_01675 are separated by 238 nucleotides
PS417_01660: PS417_01660 - tRNA s(4)U8 sulfurtransferase, at 363,906 to 365,360
_01660
PS417_01665: PS417_01665 - GTP-binding protein TypA, at 365,500 to 367,320
_01665
PS417_01670: PS417_01670 - Fe-S-oxidoreductase, at 367,527 to 367,961
_01670
PS417_01675: PS417_01675 - maltodextrin phosphorylase, at 368,200 to 370,650
_01675
Position (kb) 365
366
367
368 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6
7
8
9
10
11
12 at 365.442 kb on - strand at 367.323 kb on + strand at 367.536 kb on - strand at 367.582 kb on + strand, within PS417_01670 at 367.652 kb on + strand, within PS417_01670 at 367.652 kb on + strand, within PS417_01670 at 367.653 kb on - strand, within PS417_01670 at 367.653 kb on - strand, within PS417_01670 at 367.653 kb on - strand, within PS417_01670 at 367.671 kb on - strand, within PS417_01670 at 367.817 kb on + strand, within PS417_01670 at 367.818 kb on - strand, within PS417_01670 at 367.818 kb on - strand, within PS417_01670 at 367.892 kb on + strand, within PS417_01670 at 367.892 kb on + strand, within PS417_01670 at 367.893 kb on - strand, within PS417_01670 at 367.904 kb on - strand, within PS417_01670 at 368.062 kb on - strand at 368.104 kb on + strand at 368.105 kb on - strand at 368.138 kb on + strand at 368.158 kb on - strand at 368.164 kb on + strand at 368.165 kb on - strand at 368.177 kb on + strand at 368.178 kb on - strand at 368.178 kb on - strand at 368.178 kb on - strand at 368.268 kb on + strand at 368.268 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Gentamicin 0.008 mg/ml remove 365,442 - +5.4 367,323 + +1.8 367,536 - -0.2 367,582 + PS417_01670 0.13 -0.1 367,652 + PS417_01670 0.29 +0.1 367,652 + PS417_01670 0.29 -1.2 367,653 - PS417_01670 0.29 +0.7 367,653 - PS417_01670 0.29 +0.6 367,653 - PS417_01670 0.29 +0.4 367,671 - PS417_01670 0.33 -0.6 367,817 + PS417_01670 0.67 -1.5 367,818 - PS417_01670 0.67 -0.8 367,818 - PS417_01670 0.67 +0.4 367,892 + PS417_01670 0.84 -1.2 367,892 + PS417_01670 0.84 -0.2 367,893 - PS417_01670 0.84 -0.7 367,904 - PS417_01670 0.87 +0.2 368,062 - +4.4 368,104 + +0.5 368,105 - +0.5 368,138 + -3.2 368,158 - -0.5 368,164 + +0.1 368,165 - +0.2 368,177 + +0.4 368,178 - -2.2 368,178 - -1.6 368,178 - +2.6 368,268 + +11.9 368,268 + +1.6
Or see this region's nucleotide sequence