Strain Fitness in Pseudomonas simiae WCS417 around PS417_16365
Experiment: Gentamicin 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
| Position | Strand | Gene | LocusTag | Fraction | Gentamicin 0.008 mg/ml |
|---|---|---|---|---|---|
| remove | |||||
| 3,579,705 | + | PS417_16360 | 0.49 | -0.2 | |
| 3,579,705 | + | PS417_16360 | 0.49 | -0.1 | |
| 3,579,706 | - | PS417_16360 | 0.49 | +2.7 | |
| 3,579,706 | - | PS417_16360 | 0.49 | +0.6 | |
| 3,579,706 | - | PS417_16360 | 0.49 | -1.1 | |
| 3,580,257 | - | PS417_16360 | 0.89 | -0.4 | |
| 3,580,277 | + | +1.2 | |||
| 3,580,277 | + | +0.4 | |||
| 3,580,277 | + | -0.3 | |||
| 3,580,420 | - | -0.0 | |||
| 3,581,049 | + | -0.5 | |||
| 3,581,049 | + | -0.3 | |||
| 3,581,211 | - | +0.0 | |||
| 3,581,218 | + | -1.3 | |||
| 3,581,250 | + | +0.8 | |||
| 3,581,250 | + | +0.2 | |||
| 3,581,294 | - | +3.0 | |||
| 3,581,297 | + | -2.4 | |||
| 3,581,298 | - | +3.3 | |||
| 3,581,298 | - | +1.6 | |||
| 3,581,298 | - | +5.4 | |||
| 3,581,342 | + | +3.0 | |||
| 3,581,342 | + | +5.6 | |||
| 3,581,355 | - | +2.5 | |||
| 3,581,407 | + | +4.5 | |||
| 3,581,818 | + | PS417_16370 | 0.18 | +4.0 |
Or see this region's nucleotide sequence