Strain Fitness in Pseudomonas simiae WCS417 around PS417_16035
Experiment: Gentamicin 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
| Position | Strand | Gene | LocusTag | Fraction | Gentamicin 0.008 mg/ml |
|---|---|---|---|---|---|
| remove | |||||
| 3,514,208 | + | PS417_16030 | 0.66 | -0.1 | |
| 3,514,208 | + | PS417_16030 | 0.66 | -2.2 | |
| 3,514,370 | + | PS417_16030 | 0.76 | -0.2 | |
| 3,514,370 | + | PS417_16030 | 0.76 | +0.3 | |
| 3,514,371 | - | PS417_16030 | 0.76 | +1.3 | |
| 3,514,457 | + | PS417_16030 | 0.81 | -0.2 | |
| 3,514,457 | + | -0.4 | |||
| 3,514,457 | + | PS417_16030 | 0.81 | -0.7 | |
| 3,514,458 | - | PS417_16030 | 0.82 | +0.4 | |
| 3,514,458 | - | PS417_16030 | 0.82 | +1.1 | |
| 3,514,843 | + | +0.6 | |||
| 3,515,418 | + | PS417_16035 | 0.27 | +0.8 | |
| 3,515,419 | - | PS417_16035 | 0.27 | +0.8 | |
| 3,515,419 | - | PS417_16035 | 0.27 | +0.5 | |
| 3,515,790 | + | PS417_16035 | 0.65 | +0.4 | |
| 3,515,790 | + | PS417_16035 | 0.65 | +1.7 | |
| 3,515,791 | - | PS417_16035 | 0.65 | -1.6 | |
| 3,515,869 | - | PS417_16035 | 0.73 | +0.5 | |
| 3,516,765 | + | PS417_16045 | 0.41 | -1.0 | |
| 3,517,050 | + | PS417_16045 | 0.65 | +0.4 |
Or see this region's nucleotide sequence