Experiment: Gentamicin 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_01580 and PS417_01585 are separated by 66 nucleotides PS417_01585 and PS417_01590 are separated by 50 nucleotides PS417_01590 and PS417_01595 are separated by 1 nucleotides
PS417_01580: PS417_01580 - imidazole glycerol phosphate synthase, at 348,434 to 349,204
_01580
PS417_01585: PS417_01585 - amino acid ABC transporter substrate-binding protein, at 349,271 to 350,026
_01585
PS417_01590: PS417_01590 - polysaccharide deacetylase, at 350,077 to 350,850
_01590
PS417_01595: PS417_01595 - peptidase S41, at 350,852 to 352,168
_01595
Position (kb) 350
351 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 349.263 kb on + strand at 349.268 kb on + strand at 349.268 kb on + strand at 349.268 kb on + strand at 349.268 kb on + strand at 349.268 kb on + strand at 349.268 kb on + strand at 349.269 kb on - strand at 349.269 kb on - strand at 349.269 kb on - strand at 349.269 kb on - strand at 349.269 kb on - strand at 349.303 kb on + strand at 349.491 kb on - strand, within PS417_01585 at 349.526 kb on + strand, within PS417_01585 at 349.526 kb on + strand, within PS417_01585 at 349.527 kb on - strand, within PS417_01585 at 349.527 kb on - strand, within PS417_01585 at 349.709 kb on + strand, within PS417_01585 at 349.710 kb on - strand at 349.710 kb on - strand, within PS417_01585 at 349.753 kb on - strand, within PS417_01585 at 349.848 kb on - strand, within PS417_01585 at 349.914 kb on - strand, within PS417_01585 at 350.018 kb on + strand at 350.018 kb on + strand at 350.018 kb on + strand at 350.019 kb on - strand at 350.066 kb on - strand at 350.149 kb on - strand at 350.504 kb on + strand, within PS417_01590 at 350.765 kb on + strand, within PS417_01590 at 350.851 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Gentamicin 0.008 mg/ml remove 349,263 + +0.5 349,268 + +0.5 349,268 + +0.4 349,268 + +0.2 349,268 + -2.9 349,268 + -1.2 349,268 + -0.2 349,269 - -2.7 349,269 - -2.2 349,269 - -1.3 349,269 - -1.4 349,269 - +1.0 349,303 + -1.0 349,491 - PS417_01585 0.29 +1.6 349,526 + PS417_01585 0.34 -0.7 349,526 + PS417_01585 0.34 -1.5 349,527 - PS417_01585 0.34 +3.6 349,527 - PS417_01585 0.34 +0.4 349,709 + PS417_01585 0.58 -0.9 349,710 - +0.1 349,710 - PS417_01585 0.58 -0.9 349,753 - PS417_01585 0.64 -0.5 349,848 - PS417_01585 0.76 +0.9 349,914 - PS417_01585 0.85 +2.0 350,018 + +0.5 350,018 + -0.2 350,018 + +0.8 350,019 - +0.1 350,066 - +0.1 350,149 - +0.2 350,504 + PS417_01590 0.55 +2.2 350,765 + PS417_01590 0.89 +1.4 350,851 - +1.1
Or see this region's nucleotide sequence