Experiment: Gentamicin 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_14755 and PS417_14760 are separated by 172 nucleotides PS417_14760 and PS417_14765 overlap by 4 nucleotides
PS417_14755: PS417_14755 - UV damage repair endonuclease UvdE, at 3,225,298 to 3,226,329
_14755
PS417_14760: PS417_14760 - membrane protein, at 3,226,502 to 3,226,915
_14760
PS417_14765: PS417_14765 - sorbosone dehydrogenase, at 3,226,912 to 3,228,204
_14765
Position (kb)
3226
3227 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 3225.545 kb on + strand, within PS417_14755 at 3225.617 kb on + strand at 3225.930 kb on - strand, within PS417_14755 at 3226.121 kb on + strand, within PS417_14755 at 3226.122 kb on - strand, within PS417_14755 at 3226.122 kb on - strand at 3226.401 kb on + strand at 3226.453 kb on + strand at 3226.481 kb on - strand at 3226.481 kb on - strand at 3226.481 kb on - strand at 3226.608 kb on - strand, within PS417_14760 at 3226.608 kb on - strand, within PS417_14760 at 3226.608 kb on - strand, within PS417_14760 at 3226.748 kb on + strand, within PS417_14760 at 3226.749 kb on - strand, within PS417_14760 at 3227.105 kb on - strand, within PS417_14765 at 3227.320 kb on + strand, within PS417_14765 at 3227.320 kb on + strand, within PS417_14765 at 3227.320 kb on + strand, within PS417_14765 at 3227.320 kb on + strand, within PS417_14765 at 3227.321 kb on - strand at 3227.321 kb on - strand at 3227.321 kb on - strand, within PS417_14765 at 3227.428 kb on + strand, within PS417_14765 at 3227.546 kb on - strand, within PS417_14765 at 3227.546 kb on - strand, within PS417_14765 at 3227.653 kb on + strand, within PS417_14765 at 3227.795 kb on - strand, within PS417_14765 at 3227.806 kb on + strand, within PS417_14765 at 3227.806 kb on + strand, within PS417_14765 at 3227.812 kb on + strand, within PS417_14765 at 3227.812 kb on + strand, within PS417_14765 at 3227.887 kb on + strand, within PS417_14765
Per-strain Table
Position Strand Gene LocusTag Fraction Gentamicin 0.008 mg/ml remove 3,225,545 + PS417_14755 0.24 -0.1 3,225,617 + +4.3 3,225,930 - PS417_14755 0.61 -2.7 3,226,121 + PS417_14755 0.80 +1.2 3,226,122 - PS417_14755 0.80 -0.8 3,226,122 - +1.6 3,226,401 + +0.4 3,226,453 + +0.2 3,226,481 - +0.4 3,226,481 - -2.0 3,226,481 - -0.4 3,226,608 - PS417_14760 0.26 +0.6 3,226,608 - PS417_14760 0.26 +1.4 3,226,608 - PS417_14760 0.26 +0.3 3,226,748 + PS417_14760 0.59 +1.1 3,226,749 - PS417_14760 0.60 +1.2 3,227,105 - PS417_14765 0.15 +0.3 3,227,320 + PS417_14765 0.32 -0.7 3,227,320 + PS417_14765 0.32 +1.1 3,227,320 + PS417_14765 0.32 +0.6 3,227,320 + PS417_14765 0.32 -1.7 3,227,321 - +0.6 3,227,321 - +0.2 3,227,321 - PS417_14765 0.32 +0.2 3,227,428 + PS417_14765 0.40 -1.4 3,227,546 - PS417_14765 0.49 +0.1 3,227,546 - PS417_14765 0.49 -2.0 3,227,653 + PS417_14765 0.57 +0.7 3,227,795 - PS417_14765 0.68 -0.5 3,227,806 + PS417_14765 0.69 +1.2 3,227,806 + PS417_14765 0.69 +0.7 3,227,812 + PS417_14765 0.70 +0.8 3,227,812 + PS417_14765 0.70 +0.2 3,227,887 + PS417_14765 0.75 +0.6
Or see this region's nucleotide sequence