Strain Fitness in Pseudomonas simiae WCS417 around PS417_13760
Experiment: Gentamicin 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
| Position | Strand | Gene | LocusTag | Fraction | Gentamicin 0.008 mg/ml |
|---|---|---|---|---|---|
| remove | |||||
| 3,021,195 | + | -0.7 | |||
| 3,021,196 | - | -0.5 | |||
| 3,021,610 | + | PS417_13755 | 0.40 | +1.8 | |
| 3,021,690 | + | PS417_13755 | 0.51 | +0.1 | |
| 3,021,952 | - | PS417_13755 | 0.86 | -0.0 | |
| 3,021,952 | - | PS417_13755 | 0.86 | +1.1 | |
| 3,022,029 | + | -0.8 | |||
| 3,022,029 | + | -1.2 | |||
| 3,022,030 | - | -0.5 | |||
| 3,022,095 | - | -0.0 | |||
| 3,022,134 | + | +0.0 | |||
| 3,022,267 | + | PS417_13760 | 0.29 | -0.4 | |
| 3,022,277 | + | PS417_13760 | 0.32 | -0.3 | |
| 3,022,394 | - | PS417_13760 | 0.64 | -1.6 | |
| 3,022,464 | + | PS417_13760 | 0.84 | +0.1 | |
| 3,022,465 | - | PS417_13760 | 0.84 | -1.7 | |
| 3,022,675 | + | +0.1 | |||
| 3,022,676 | - | -1.7 | |||
| 3,022,760 | - | PS417_13765 | 0.11 | -2.8 | |
| 3,022,780 | + | PS417_13765 | 0.12 | +0.3 | |
| 3,022,968 | - | PS417_13765 | 0.24 | -0.6 | |
| 3,022,968 | - | PS417_13765 | 0.24 | +0.3 |
Or see this region's nucleotide sequence