Strain Fitness in Pseudomonas simiae WCS417 around PS417_12325
Experiment: Gentamicin 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Gentamicin 0.008 mg/ml |
---|---|---|---|---|---|
remove | |||||
2,679,242 | + | -0.2 | |||
2,679,242 | + | +0.4 | |||
2,679,398 | - | -0.7 | |||
2,679,404 | + | -0.7 | |||
2,679,404 | + | -0.5 | |||
2,679,404 | + | +0.3 | |||
2,679,408 | + | -2.3 | |||
2,679,408 | + | -0.5 | |||
2,679,408 | + | +0.1 | |||
2,679,409 | - | -0.5 | |||
2,679,409 | - | +2.2 | |||
2,679,409 | - | +0.6 | |||
2,679,409 | - | -2.6 | |||
2,680,085 | + | -0.9 | |||
2,680,646 | + | PS417_12325 | 0.66 | +0.6 | |
2,680,808 | + | PS417_12325 | 0.87 | +1.4 | |
2,681,372 | + | +0.7 | |||
2,681,613 | + | PS417_12335 | 0.36 | -0.1 | |
2,681,614 | - | PS417_12335 | 0.36 | +1.3 |
Or see this region's nucleotide sequence