Strain Fitness in Pseudomonas simiae WCS417 around PS417_12325

Experiment: Gentamicin 0.008 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPS417_12320 and PS417_12325 are separated by 65 nucleotidesPS417_12325 and PS417_12330 are separated by 70 nucleotidesPS417_12330 and PS417_12335 overlap by 4 nucleotides PS417_12320: PS417_12320 - amino acid ABC transporter substrate-binding protein, at 2,679,506 to 2,680,090 _12320 PS417_12325: PS417_12325 - precorrin-4 C11-methyltransferase, at 2,680,156 to 2,680,902 _12325 PS417_12330: PS417_12330 - cobalamin biosynthesis protein CobE, at 2,680,973 to 2,681,365 _12330 PS417_12335: PS417_12335 - cobalt transporter, at 2,681,362 to 2,682,066 _12335 Position (kb) 2680 2681Strain fitness (log2 ratio) -2 -1 0 1 2at 2679.242 kb on + strandat 2679.242 kb on + strandat 2679.398 kb on - strandat 2679.404 kb on + strandat 2679.404 kb on + strandat 2679.404 kb on + strandat 2679.408 kb on + strandat 2679.408 kb on + strandat 2679.408 kb on + strandat 2679.409 kb on - strandat 2679.409 kb on - strandat 2679.409 kb on - strandat 2679.409 kb on - strandat 2680.085 kb on + strandat 2680.646 kb on + strand, within PS417_12325at 2680.808 kb on + strand, within PS417_12325at 2681.372 kb on + strandat 2681.613 kb on + strand, within PS417_12335at 2681.614 kb on - strand, within PS417_12335

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Gentamicin 0.008 mg/ml
remove
2,679,242 + -0.2
2,679,242 + +0.4
2,679,398 - -0.7
2,679,404 + -0.7
2,679,404 + -0.5
2,679,404 + +0.3
2,679,408 + -2.3
2,679,408 + -0.5
2,679,408 + +0.1
2,679,409 - -0.5
2,679,409 - +2.2
2,679,409 - +0.6
2,679,409 - -2.6
2,680,085 + -0.9
2,680,646 + PS417_12325 0.66 +0.6
2,680,808 + PS417_12325 0.87 +1.4
2,681,372 + +0.7
2,681,613 + PS417_12335 0.36 -0.1
2,681,614 - PS417_12335 0.36 +1.3

Or see this region's nucleotide sequence