Experiment: Gentamicin 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_01210 and PS417_01215 are separated by 56 nucleotides PS417_01215 and PS417_01220 are separated by 28 nucleotides PS417_01220 and PS417_01230 are separated by 610 nucleotides
PS417_01210: PS417_01210 - hypothetical protein, at 265,433 to 266,974
_01210
PS417_01215: PS417_01215 - membrane protein, at 267,031 to 267,882
_01215
PS417_01220: PS417_01220 - hypothetical protein, at 267,911 to 268,267
_01220
PS417_01230: PS417_01230 - hypothetical protein, at 268,878 to 269,123
_01230
Position (kb) 267
268 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 266.204 kb on + strand, within PS417_01210 at 266.204 kb on + strand, within PS417_01210 at 266.205 kb on - strand, within PS417_01210 at 266.315 kb on + strand, within PS417_01210 at 266.316 kb on - strand, within PS417_01210 at 266.487 kb on - strand, within PS417_01210 at 266.504 kb on + strand, within PS417_01210 at 266.609 kb on + strand, within PS417_01210 at 266.609 kb on + strand, within PS417_01210 at 266.851 kb on + strand at 266.852 kb on - strand at 266.972 kb on + strand at 266.972 kb on + strand at 266.973 kb on - strand at 267.032 kb on + strand at 267.156 kb on + strand, within PS417_01215 at 267.156 kb on + strand, within PS417_01215 at 267.156 kb on + strand, within PS417_01215 at 267.157 kb on - strand, within PS417_01215 at 267.410 kb on + strand, within PS417_01215 at 267.591 kb on - strand, within PS417_01215 at 267.591 kb on - strand, within PS417_01215 at 267.795 kb on - strand, within PS417_01215 at 267.897 kb on - strand at 267.897 kb on - strand at 267.897 kb on - strand at 267.897 kb on - strand at 267.966 kb on + strand, within PS417_01220 at 267.967 kb on - strand, within PS417_01220 at 267.967 kb on - strand, within PS417_01220 at 268.054 kb on - strand, within PS417_01220 at 268.059 kb on + strand, within PS417_01220 at 268.059 kb on + strand, within PS417_01220 at 268.059 kb on + strand, within PS417_01220 at 268.060 kb on - strand, within PS417_01220 at 268.060 kb on - strand, within PS417_01220 at 268.060 kb on - strand, within PS417_01220 at 268.358 kb on + strand at 268.358 kb on + strand at 268.359 kb on - strand at 268.359 kb on - strand at 268.397 kb on + strand at 268.397 kb on + strand at 268.397 kb on + strand at 268.397 kb on + strand at 268.397 kb on + strand at 268.401 kb on + strand at 268.401 kb on + strand at 268.401 kb on + strand at 268.401 kb on + strand at 268.402 kb on - strand at 268.402 kb on - strand at 268.402 kb on - strand at 268.406 kb on + strand at 268.406 kb on + strand at 268.409 kb on + strand at 268.409 kb on + strand at 268.409 kb on + strand at 268.423 kb on + strand at 268.500 kb on + strand at 268.501 kb on - strand at 268.501 kb on - strand at 268.501 kb on - strand at 268.504 kb on + strand at 268.504 kb on + strand at 268.598 kb on + strand at 268.598 kb on + strand at 268.599 kb on - strand at 268.599 kb on - strand at 268.599 kb on - strand at 268.648 kb on + strand at 268.652 kb on + strand at 268.652 kb on + strand at 268.652 kb on + strand at 268.652 kb on + strand at 268.652 kb on + strand at 268.653 kb on - strand at 268.820 kb on + strand at 268.820 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Gentamicin 0.008 mg/ml remove 266,204 + PS417_01210 0.50 +0.6 266,204 + PS417_01210 0.50 +1.6 266,205 - PS417_01210 0.50 +0.6 266,315 + PS417_01210 0.57 +0.8 266,316 - PS417_01210 0.57 +0.5 266,487 - PS417_01210 0.68 +0.5 266,504 + PS417_01210 0.69 +2.3 266,609 + PS417_01210 0.76 -1.4 266,609 + PS417_01210 0.76 +2.2 266,851 + -0.2 266,852 - -1.4 266,972 + +1.7 266,972 + -0.0 266,973 - +0.1 267,032 + -0.3 267,156 + PS417_01215 0.15 -1.1 267,156 + PS417_01215 0.15 +0.1 267,156 + PS417_01215 0.15 +0.1 267,157 - PS417_01215 0.15 +0.1 267,410 + PS417_01215 0.44 -0.1 267,591 - PS417_01215 0.66 -1.0 267,591 - PS417_01215 0.66 -3.3 267,795 - PS417_01215 0.90 -1.7 267,897 - -0.0 267,897 - +0.2 267,897 - -1.0 267,897 - -0.2 267,966 + PS417_01220 0.15 +2.1 267,967 - PS417_01220 0.16 +0.4 267,967 - PS417_01220 0.16 +0.2 268,054 - PS417_01220 0.40 +0.4 268,059 + PS417_01220 0.41 -0.1 268,059 + PS417_01220 0.41 -0.7 268,059 + PS417_01220 0.41 -0.7 268,060 - PS417_01220 0.42 -0.2 268,060 - PS417_01220 0.42 +0.7 268,060 - PS417_01220 0.42 +0.6 268,358 + -1.3 268,358 + -0.1 268,359 - +0.1 268,359 - +0.7 268,397 + +0.1 268,397 + +0.7 268,397 + -1.2 268,397 + +0.9 268,397 + -0.1 268,401 + +1.4 268,401 + -0.8 268,401 + +1.1 268,401 + -2.3 268,402 - -0.8 268,402 - +1.7 268,402 - -0.2 268,406 + -0.6 268,406 + -0.5 268,409 + +1.8 268,409 + +0.6 268,409 + +2.0 268,423 + +1.1 268,500 + +1.2 268,501 - -0.1 268,501 - -0.3 268,501 - -0.5 268,504 + -0.4 268,504 + -1.3 268,598 + -0.3 268,598 + +0.1 268,599 - +0.5 268,599 - -0.6 268,599 - -0.6 268,648 + -1.1 268,652 + -0.3 268,652 + -0.3 268,652 + -0.7 268,652 + -1.2 268,652 + +0.1 268,653 - -0.5 268,820 + -0.8 268,820 + -1.9
Or see this region's nucleotide sequence