Strain Fitness in Pseudomonas simiae WCS417 around PS417_11735
Experiment: Gentamicin 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Gentamicin 0.008 mg/ml |
---|---|---|---|---|---|
remove | |||||
2,551,785 | - | PS417_11730 | 0.62 | -0.2 | |
2,551,988 | + | PS417_11730 | 0.75 | -0.5 | |
2,552,377 | - | -1.4 | |||
2,552,702 | + | PS417_11735 | 0.13 | -0.1 | |
2,552,702 | + | PS417_11735 | 0.13 | +0.1 | |
2,553,143 | + | PS417_11735 | 0.48 | +0.4 | |
2,553,200 | + | PS417_11735 | 0.53 | +1.2 | |
2,553,213 | - | PS417_11735 | 0.54 | -0.8 | |
2,553,597 | + | PS417_11735 | 0.85 | -0.3 | |
2,553,603 | + | PS417_11735 | 0.86 | -0.1 | |
2,553,605 | + | +0.2 | |||
2,553,606 | - | PS417_11735 | 0.86 | +0.4 | |
2,553,606 | - | PS417_11735 | 0.86 | +2.4 | |
2,553,683 | + | +1.5 | |||
2,553,684 | - | -0.2 | |||
2,553,772 | - | -1.0 | |||
2,553,941 | + | -0.7 | |||
2,554,315 | + | PS417_11740 | 0.87 | -2.1 | |
2,554,330 | + | +0.4 | |||
2,554,764 | + | PS417_11745 | 0.47 | -2.0 | |
2,554,764 | + | +1.2 |
Or see this region's nucleotide sequence