Strain Fitness in Pseudomonas simiae WCS417 around PS417_11310
Experiment: Gentamicin 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
| Position | Strand | Gene | LocusTag | Fraction | Gentamicin 0.008 mg/ml |
|---|---|---|---|---|---|
| remove | |||||
| 2,421,443 | + | PS417_11305 | 0.47 | +0.6 | |
| 2,421,444 | - | PS417_11305 | 0.47 | -1.8 | |
| 2,421,444 | - | PS417_11305 | 0.47 | -0.8 | |
| 2,421,444 | - | PS417_11305 | 0.47 | -0.4 | |
| 2,421,597 | - | PS417_11305 | 0.59 | -0.3 | |
| 2,422,072 | - | -2.1 | |||
| 2,422,089 | - | +1.2 | |||
| 2,422,118 | + | +0.5 | |||
| 2,422,119 | - | +0.7 | |||
| 2,422,305 | + | -0.2 | |||
| 2,422,393 | + | +1.2 | |||
| 2,422,547 | + | PS417_11310 | 0.11 | -0.9 | |
| 2,422,548 | - | PS417_11310 | 0.11 | -1.9 | |
| 2,422,621 | + | PS417_11310 | 0.17 | -2.4 | |
| 2,422,708 | + | PS417_11310 | 0.24 | -0.4 | |
| 2,422,709 | - | PS417_11310 | 0.24 | +0.6 | |
| 2,423,104 | + | PS417_11310 | 0.58 | -0.1 | |
| 2,423,105 | - | PS417_11310 | 0.58 | -2.5 | |
| 2,423,735 | + | -0.6 | |||
| 2,424,529 | + | -1.0 | |||
| 2,424,588 | - | +0.7 |
Or see this region's nucleotide sequence