Experiment: Gentamicin 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_11015 and PS417_11020 are separated by 36 nucleotides PS417_11020 and PS417_11025 are separated by 37 nucleotides PS417_11025 and PS417_11030 overlap by 4 nucleotides
PS417_11015: PS417_11015 - Ketoglutarate semialdehyde dehydrogenase (EC 1.2.1.26) (from data) , at 2,360,549 to 2,362,129
_11015
PS417_11020: PS417_11020 - L-arabinolactonase (EC 3.1.1.15) (from data) , at 2,362,166 to 2,363,029
_11020
PS417_11025: PS417_11025 - sugar ABC transporter substrate-binding protein, at 2,363,067 to 2,364,071
_11025
PS417_11030: PS417_11030 - L-arabinose transporter ATP-binding protein, at 2,364,068 to 2,365,570
_11030
Position (kb)
2363
2364
2365 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2362.174 kb on + strand at 2362.569 kb on + strand, within PS417_11020 at 2362.791 kb on - strand, within PS417_11020 at 2362.791 kb on - strand, within PS417_11020 at 2363.041 kb on + strand at 2363.466 kb on + strand, within PS417_11025 at 2363.559 kb on + strand, within PS417_11025 at 2363.559 kb on + strand, within PS417_11025 at 2363.560 kb on - strand, within PS417_11025 at 2363.560 kb on - strand, within PS417_11025 at 2363.560 kb on - strand, within PS417_11025 at 2363.560 kb on - strand, within PS417_11025 at 2363.934 kb on + strand, within PS417_11025 at 2363.935 kb on - strand, within PS417_11025 at 2363.937 kb on - strand, within PS417_11025 at 2363.955 kb on + strand, within PS417_11025 at 2363.955 kb on + strand, within PS417_11025 at 2363.956 kb on - strand, within PS417_11025 at 2363.956 kb on - strand, within PS417_11025 at 2364.384 kb on + strand, within PS417_11030 at 2364.552 kb on + strand, within PS417_11030 at 2364.552 kb on + strand, within PS417_11030 at 2364.552 kb on + strand, within PS417_11030 at 2364.552 kb on + strand, within PS417_11030 at 2364.553 kb on - strand, within PS417_11030 at 2364.553 kb on - strand, within PS417_11030 at 2364.653 kb on + strand, within PS417_11030 at 2364.653 kb on + strand, within PS417_11030 at 2364.654 kb on - strand, within PS417_11030 at 2364.654 kb on - strand, within PS417_11030 at 2364.806 kb on + strand, within PS417_11030 at 2364.806 kb on + strand, within PS417_11030 at 2364.807 kb on - strand, within PS417_11030 at 2364.807 kb on - strand, within PS417_11030
Per-strain Table
Position Strand Gene LocusTag Fraction Gentamicin 0.008 mg/ml remove 2,362,174 + -0.2 2,362,569 + PS417_11020 0.47 -0.1 2,362,791 - PS417_11020 0.72 +0.5 2,362,791 - PS417_11020 0.72 +0.3 2,363,041 + -0.4 2,363,466 + PS417_11025 0.40 +0.2 2,363,559 + PS417_11025 0.49 -1.4 2,363,559 + PS417_11025 0.49 +2.0 2,363,560 - PS417_11025 0.49 -0.0 2,363,560 - PS417_11025 0.49 +0.8 2,363,560 - PS417_11025 0.49 -1.4 2,363,560 - PS417_11025 0.49 -0.9 2,363,934 + PS417_11025 0.86 +0.7 2,363,935 - PS417_11025 0.86 +0.6 2,363,937 - PS417_11025 0.87 -0.4 2,363,955 + PS417_11025 0.88 -0.5 2,363,955 + PS417_11025 0.88 +1.3 2,363,956 - PS417_11025 0.88 +2.8 2,363,956 - PS417_11025 0.88 +2.4 2,364,384 + PS417_11030 0.21 +0.4 2,364,552 + PS417_11030 0.32 -1.3 2,364,552 + PS417_11030 0.32 +1.6 2,364,552 + PS417_11030 0.32 -0.8 2,364,552 + PS417_11030 0.32 -0.5 2,364,553 - PS417_11030 0.32 -2.5 2,364,553 - PS417_11030 0.32 +0.9 2,364,653 + PS417_11030 0.39 -0.8 2,364,653 + PS417_11030 0.39 -0.4 2,364,654 - PS417_11030 0.39 +0.7 2,364,654 - PS417_11030 0.39 +0.8 2,364,806 + PS417_11030 0.49 +0.9 2,364,806 + PS417_11030 0.49 +0.5 2,364,807 - PS417_11030 0.49 +0.4 2,364,807 - PS417_11030 0.49 -0.2
Or see this region's nucleotide sequence