Strain Fitness in Pseudomonas simiae WCS417 around PS417_10670

Experiment: Gentamicin 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_10660 and PS417_10665 are separated by 134 nucleotidesPS417_10665 and PS417_10670 overlap by 4 nucleotidesPS417_10670 and PS417_10675 are separated by 255 nucleotides PS417_10660: PS417_10660 - histidine kinase, at 2,275,191 to 2,278,805 _10660 PS417_10665: PS417_10665 - hypothetical protein, at 2,278,940 to 2,279,365 _10665 PS417_10670: PS417_10670 - 2,5-diketo-D-gluconic acid reductase, at 2,279,362 to 2,280,180 _10670 PS417_10675: PS417_10675 - TetR family transcriptional regulator, at 2,280,436 to 2,281,074 _10675 Position (kb) 2279 2280 2281Strain fitness (log2 ratio) -3 -2 -1 0 1at 2278.484 kb on + strandat 2278.846 kb on - strandat 2278.860 kb on + strandat 2278.884 kb on - strandat 2278.884 kb on - strandat 2279.174 kb on + strand, within PS417_10665at 2279.175 kb on - strand, within PS417_10665at 2279.633 kb on + strand, within PS417_10670at 2279.633 kb on + strand, within PS417_10670at 2279.633 kb on + strand, within PS417_10670at 2279.634 kb on - strand, within PS417_10670at 2279.634 kb on - strand, within PS417_10670at 2279.897 kb on + strand, within PS417_10670at 2280.050 kb on + strand, within PS417_10670at 2280.316 kb on - strandat 2280.397 kb on + strandat 2280.398 kb on - strandat 2280.836 kb on - strand, within PS417_10675

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Per-strain Table

Position Strand Gene LocusTag Fraction Gentamicin 0.008 mg/ml
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2,278,484 + -1.9
2,278,846 - +0.4
2,278,860 + -3.1
2,278,884 - +1.7
2,278,884 - -0.4
2,279,174 + PS417_10665 0.55 +0.6
2,279,175 - PS417_10665 0.55 +0.2
2,279,633 + PS417_10670 0.33 -0.7
2,279,633 + PS417_10670 0.33 -0.8
2,279,633 + PS417_10670 0.33 -0.9
2,279,634 - PS417_10670 0.33 -0.5
2,279,634 - PS417_10670 0.33 +0.3
2,279,897 + PS417_10670 0.65 -3.4
2,280,050 + PS417_10670 0.84 -0.0
2,280,316 - +0.0
2,280,397 + -0.4
2,280,398 - +0.3
2,280,836 - PS417_10675 0.63 -1.2

Or see this region's nucleotide sequence